Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   OYT13_RS02220 Genome accession   NZ_CP113827
Coordinates   498092..499630 (-) Length   512 a.a.
NCBI ID   WP_261939317.1    Uniprot ID   -
Organism   Pandoraea sp. XJJ-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 493092..504630
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OYT13_RS02200 (OYT13_02200) - 494565..495917 (+) 1353 WP_026132298.1 sigma-54 dependent transcriptional regulator -
  OYT13_RS02205 (OYT13_02205) - 496035..496559 (-) 525 WP_268567191.1 TlpA disulfide reductase family protein -
  OYT13_RS02210 (OYT13_02210) - 496684..497430 (-) 747 WP_268567192.1 hypothetical protein -
  OYT13_RS02215 (OYT13_02215) - 497530..498069 (+) 540 WP_017235614.1 hypothetical protein -
  OYT13_RS02220 (OYT13_02220) comM 498092..499630 (-) 1539 WP_261939317.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  OYT13_RS02225 (OYT13_02225) - 499918..500166 (-) 249 WP_017235617.1 accessory factor UbiK family protein -
  OYT13_RS02230 (OYT13_02230) - 500560..501381 (+) 822 WP_017235618.1 TorF family putative porin -
  OYT13_RS02235 (OYT13_02235) - 501395..501733 (+) 339 WP_010804740.1 P-II family nitrogen regulator -
  OYT13_RS02240 (OYT13_02240) amt 501820..503295 (+) 1476 WP_268567837.1 ammonium transporter -

Sequence

Protein


Download         Length: 512 a.a.        Molecular weight: 53860.49 Da        Isoelectric Point: 7.9784

>NTDB_id=763182 OYT13_RS02220 WP_261939317.1 498092..499630(-) (comM) [Pandoraea sp. XJJ-1]
MSVAVVSSRAITGMAARAVTVEVHLANGLPGLSLVGLPDTEVKESRERVRSALQNSRFEFPARRITVNLAPADLPKASGC
FDLPIALGILAASGQLPDIGLRSHEFAGELSLTGELRPVRGALAMASAMLAEPSARALVLPAASAQEAALVEGATVYGAR
TLLDVCAHLAEPDVATPLPRAVVPLALAASADSGVAQASDLPDLGDIKGQEHAKRALEVAAAGGHHILFYGPPGTGKSML
ATRLAGLLPALSKAQAVEAATLASLSAQGFDMRHWGRRPFRAPHHTASAAALVGGGSAPRPGEISLAHRGVLFLDELPEF
QRRVLEVLREPLELGHVTISRAGGHATFPAAFQLVAAMNPCPCGDLGHPSRNCRCTSEAVARYRNRLSGPLLDRIDLHVE
VPALSAETFAAPASGERSEVVATRVRQARERQLSRQGQLNCGLSSRALEAQCALQPNAQDVLHRAVTQHHWSARTYHRVL
RVARTVADLAGIGDIDAHHVAEAVQYREAPSS

Nucleotide


Download         Length: 1539 bp        

>NTDB_id=763182 OYT13_RS02220 WP_261939317.1 498092..499630(-) (comM) [Pandoraea sp. XJJ-1]
ATGTCAGTGGCAGTTGTCAGCAGCCGTGCGATCACGGGGATGGCGGCCCGCGCGGTCACCGTCGAAGTGCACTTGGCGAA
CGGGCTGCCCGGCCTGTCGCTGGTCGGCCTGCCCGATACCGAGGTCAAGGAAAGCCGGGAGCGCGTGCGCTCTGCGTTGC
AGAACAGCCGGTTCGAATTTCCCGCCCGGCGCATCACGGTCAATCTGGCGCCGGCCGATTTACCCAAAGCGTCTGGCTGC
TTCGATCTGCCGATTGCGCTTGGCATCCTCGCGGCCAGCGGTCAGCTCCCCGACATCGGATTGCGCTCGCACGAGTTTGC
GGGAGAGTTGTCGCTCACCGGCGAGTTGCGTCCGGTTCGCGGGGCATTGGCGATGGCGAGCGCCATGCTGGCCGAACCGT
CGGCGCGTGCGCTCGTGCTGCCCGCGGCAAGCGCGCAGGAAGCCGCATTGGTGGAGGGCGCCACGGTCTATGGCGCGCGC
ACCTTGCTCGATGTCTGCGCGCATCTCGCCGAGCCCGACGTGGCGACGCCGCTGCCGCGCGCCGTTGTCCCACTGGCGCT
GGCGGCGTCGGCCGACAGCGGCGTCGCGCAAGCAAGCGACCTCCCCGACCTGGGCGATATCAAGGGACAAGAGCACGCCA
AGCGCGCCCTGGAAGTTGCGGCGGCAGGCGGACATCACATCTTGTTCTACGGCCCACCGGGTACCGGCAAGTCGATGCTG
GCGACGCGGCTCGCGGGACTGCTCCCGGCGCTGAGCAAGGCGCAGGCCGTGGAGGCCGCCACGCTGGCCAGCCTGAGCGC
ACAGGGATTCGATATGCGCCACTGGGGCCGGCGACCGTTTCGCGCGCCGCATCATACGGCGTCGGCCGCGGCGCTGGTGG
GCGGAGGTAGCGCGCCGCGGCCCGGTGAAATCAGTCTGGCCCATCGCGGGGTGCTCTTTCTCGACGAACTCCCTGAATTT
CAGCGCCGCGTGCTCGAAGTCCTGCGCGAACCGCTGGAGTTGGGCCATGTCACGATCTCCCGCGCGGGCGGACACGCCAC
GTTCCCCGCCGCGTTTCAACTCGTGGCCGCGATGAACCCGTGCCCGTGCGGCGACCTGGGACATCCGTCGCGCAATTGCC
GCTGTACGAGCGAGGCCGTGGCGCGATATCGCAATCGTCTCTCGGGCCCGCTGCTCGATCGCATCGACCTGCACGTCGAA
GTGCCGGCGCTGAGCGCCGAGACATTCGCCGCGCCGGCCAGCGGCGAGCGCAGCGAAGTCGTGGCGACACGCGTCAGGCA
GGCGCGGGAGCGCCAGCTATCTCGCCAGGGCCAATTGAACTGCGGCCTGTCGAGCCGTGCGCTGGAGGCGCAATGCGCCC
TGCAGCCGAACGCGCAGGACGTTCTGCACCGCGCAGTGACGCAACACCATTGGTCGGCACGCACCTATCATCGCGTGCTG
CGCGTGGCGCGCACGGTAGCCGATCTCGCAGGCATTGGCGATATCGATGCCCATCACGTCGCAGAGGCCGTGCAATACCG
CGAAGCCCCGTCATCGTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(415-507)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(203-407)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

53.346

99.219

0.529
  comM Vibrio campbellii strain DS40M4

51.772

99.219

0.514
  comM Haemophilus influenzae Rd KW20

50.688

99.414

0.504
  comM Glaesserella parasuis strain SC1401

50.098

99.805

0.5
  comM Legionella pneumophila str. Paris

49.315

99.805

0.492
  comM Legionella pneumophila strain ERS1305867

49.315

99.805

0.492
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.444

100

0.445