Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   OX890_RS00255 Genome accession   NZ_CP113808
Coordinates   69973..71499 (+) Length   508 a.a.
NCBI ID   WP_126493004.1    Uniprot ID   -
Organism   Shewanella sp. DAU305     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 64973..76499
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OX890_RS00240 (OX890_00240) - 65048..66832 (-) 1785 WP_126493551.1 GGDEF domain-containing protein -
  OX890_RS00245 (OX890_00245) - 66878..67906 (-) 1029 WP_126493001.1 ABC transporter substrate-binding protein -
  OX890_RS00250 (OX890_00250) - 68647..69756 (-) 1110 WP_126493002.1 DUF1963 domain-containing protein -
  OX890_RS00255 (OX890_00255) comM 69973..71499 (+) 1527 WP_126493004.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  OX890_RS00260 (OX890_00260) - 71609..72505 (+) 897 WP_006083469.1 acyltransferase -
  OX890_RS00265 (OX890_00265) - 72519..73463 (+) 945 WP_126493006.1 acyltransferase -
  OX890_RS00270 (OX890_00270) - 73471..73965 (-) 495 WP_126493552.1 DUF523 domain-containing protein -
  OX890_RS00275 (OX890_00275) - 74267..75034 (+) 768 WP_126493008.1 GntR family transcriptional regulator -
  OX890_RS00280 (OX890_00280) prpB 75087..75965 (+) 879 WP_106649158.1 methylisocitrate lyase -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 55406.79 Da        Isoelectric Point: 8.1069

>NTDB_id=763159 OX890_RS00255 WP_126493004.1 69973..71499(+) (comM) [Shewanella sp. DAU305]
MAIACVNTRASCGVEAPQVTVEVHLSNGLPAFNLVGLPEASVKEARERVRSALINAGFEFPMRRITVNLAPADLPKQGGR
YDLPIAVGILAASEQIPINSLKNIEFVGELALSGHIRYCQGLLPAIIAAKRQDHTLVLPLDNRHDAELVGYPNVLFGSHL
QSLAAYLQGQNQLPTLAPQLEWVSQETPESHTCLSDVIGQYQAKQALEIAAAGNHNLLMLGPPGTGKTMLASRMMALLPA
LNYEEALEVAAIHSVAGLDIKPQHFLQRPFRAPHHTSSSISLVGGGSIPKPGEISLAHRGVLFLDEVAEFPRKVLDCLRE
PMETGEVVISRAAAKLTFLSRFQLIAAMNPSPSGDIDSQHRSSPEQIQRYLSRLSGPFLDRFDLTIEVPKLPAGTLTQAA
PQTETSQDIAKRVKLARELQLARAGVLNSELTGKQLKRFSGLSDADLVFLEQSVVKLGLSVRSFHRIQRVARTIADLEQV
PNTERRHIAQALGYRAMDRLLARLSQQY

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=763159 OX890_RS00255 WP_126493004.1 69973..71499(+) (comM) [Shewanella sp. DAU305]
ATGGCGATTGCCTGCGTCAATACCCGAGCCAGTTGTGGGGTCGAAGCTCCTCAAGTCACAGTTGAAGTGCATCTCAGCAA
CGGCTTACCAGCATTTAATCTTGTAGGCTTACCCGAAGCTTCGGTAAAAGAAGCTCGTGAGCGAGTACGCAGTGCCTTGA
TCAATGCGGGATTCGAGTTTCCAATGCGGCGGATAACCGTCAATCTCGCGCCAGCTGATTTACCTAAACAAGGTGGCCGC
TACGACTTACCCATCGCCGTGGGCATATTGGCCGCTTCGGAACAGATTCCCATTAACAGTTTAAAAAATATCGAGTTTGT
CGGCGAGCTGGCACTGTCTGGGCACATACGTTACTGCCAAGGGTTATTGCCCGCGATTATCGCGGCGAAGCGCCAAGACC
ATACCTTGGTCTTACCGCTAGATAACCGCCACGATGCAGAGCTAGTCGGCTATCCCAATGTGTTGTTTGGCTCGCATCTG
CAAAGTCTAGCCGCGTATTTACAAGGGCAAAACCAACTACCAACACTGGCGCCACAGTTAGAATGGGTAAGCCAAGAGAC
ACCCGAGTCCCATACTTGCCTGAGCGATGTGATTGGCCAATATCAGGCCAAGCAAGCACTCGAAATTGCCGCTGCGGGTA
ACCACAACCTCTTGATGCTAGGCCCGCCAGGTACGGGCAAAACCATGCTTGCCAGTCGCATGATGGCGCTATTGCCCGCG
CTTAATTATGAGGAAGCATTAGAAGTAGCAGCAATTCATTCCGTTGCTGGACTCGACATTAAACCGCAGCATTTTTTACA
GCGACCCTTTCGGGCGCCGCACCACACGAGTTCTTCGATTTCCCTCGTGGGCGGTGGCAGTATTCCCAAACCCGGTGAAA
TTTCCCTCGCCCACCGTGGCGTGCTGTTTTTAGATGAAGTGGCTGAATTTCCGCGTAAAGTCTTAGATTGCCTGCGCGAA
CCGATGGAAACCGGCGAAGTAGTGATTTCCCGCGCCGCCGCTAAGCTGACATTTTTGAGTCGCTTCCAATTAATCGCGGC
GATGAATCCCAGCCCGAGTGGCGATATCGATAGCCAACACAGATCGAGCCCAGAACAAATTCAGCGTTATCTTTCGCGGC
TTTCAGGCCCGTTTCTCGACCGTTTCGATTTAACCATTGAAGTCCCCAAACTCCCCGCGGGCACCTTAACTCAAGCCGCG
CCGCAAACAGAGACCAGCCAAGATATCGCCAAACGAGTGAAACTAGCGCGTGAGCTGCAACTCGCCCGCGCTGGCGTGCT
CAATAGTGAACTCACAGGGAAACAATTGAAACGCTTTAGCGGACTCAGTGACGCTGATTTAGTGTTTTTGGAGCAAAGCG
TGGTAAAGCTTGGCCTCTCGGTTCGCAGTTTTCATCGTATACAAAGAGTTGCGCGCACGATTGCCGATCTGGAACAAGTG
CCTAACACAGAACGCCGCCATATTGCCCAAGCACTGGGTTATCGCGCCATGGATAGATTACTCGCCCGCTTATCCCAGCA
ATATTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(404-495)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-393)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

57.255

100

0.575
  comM Haemophilus influenzae Rd KW20

56.299

100

0.563
  comM Vibrio campbellii strain DS40M4

55.796

100

0.559
  comM Glaesserella parasuis strain SC1401

56.016

99.803

0.559
  comM Legionella pneumophila str. Paris

46.169

100

0.463
  comM Legionella pneumophila strain ERS1305867

46.169

100

0.463
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.548

97.638

0.425