Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   OXH18_RS13005 Genome accession   NZ_CP113797
Coordinates   3014295..3014660 (-) Length   121 a.a.
NCBI ID   WP_268607510.1    Uniprot ID   A0A9E9C5F5
Organism   Thermocoleostomius sinensis A174     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3009295..3019660
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OXH18_RS12995 (OXH18_12995) - 3010654..3013464 (-) 2811 WP_268607508.1 methyl-accepting chemotaxis protein -
  OXH18_RS13000 (OXH18_13000) - 3013544..3014074 (-) 531 WP_268607509.1 chemotaxis protein CheW -
  OXH18_RS13005 (OXH18_13005) pilH 3014295..3014660 (-) 366 WP_268607510.1 response regulator transcription factor Machinery gene
  OXH18_RS13010 (OXH18_13010) hmpF 3015395..3017071 (+) 1677 WP_268607511.1 pilus motility taxis protein HmpF -
  OXH18_RS13015 (OXH18_13015) - 3017207..3019591 (+) 2385 WP_268607512.1 PBP1A family penicillin-binding protein -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13401.44 Da        Isoelectric Point: 4.6952

>NTDB_id=763112 OXH18_RS13005 WP_268607510.1 3014295..3014660(-) (pilH) [Thermocoleostomius sinensis A174]
MSTVLVVEDSISQREMITDLLRGSGLEVTVASDGVEALEKVQGQRPDLVVLDIVMPRMNGYEVCRRLKANPNTQDVPVVM
CSSKGEEFDRYWGMKQGADAYIAKPFQPTELVGTVKQLLRG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=763112 OXH18_RS13005 WP_268607510.1 3014295..3014660(-) (pilH) [Thermocoleostomius sinensis A174]
ATGAGTACAGTTCTAGTTGTGGAAGATAGTATTTCTCAGCGCGAGATGATCACTGACTTGTTGCGCGGCAGTGGTTTAGA
GGTGACGGTTGCTAGCGATGGGGTCGAGGCGTTAGAGAAAGTTCAGGGTCAGCGCCCCGATTTGGTGGTGTTAGATATTG
TGATGCCTCGTATGAATGGATATGAGGTGTGTCGGCGGTTAAAAGCTAATCCCAATACTCAAGATGTGCCAGTGGTGATG
TGTTCTTCAAAAGGAGAAGAATTCGATCGCTATTGGGGCATGAAACAGGGGGCTGATGCTTACATCGCCAAGCCGTTTCA
GCCAACAGAACTGGTTGGAACGGTCAAACAGCTATTGCGCGGCTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

75.207

100

0.752
  pilG Acinetobacter baumannii strain A118

42.105

94.215

0.397
  vicR Streptococcus mutans UA159

38.333

99.174

0.38
  micA Streptococcus pneumoniae Cp1015

38.333

99.174

0.38
  pilL-C Synechocystis sp. PCC 6803

36.364

100

0.364