Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   QMK08_RS06080 Genome accession   NZ_CP125386
Coordinates   1186086..1187888 (-) Length   600 a.a.
NCBI ID   WP_002876788.1    Uniprot ID   -
Organism   Campylobacter jejuni strain SKBC41     
Function   integration of short DNA fragment (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1181086..1192888
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMK08_RS06055 (QMK08_06055) - 1181215..1182414 (+) 1200 WP_002876792.1 MFS transporter -
  QMK08_RS06060 (QMK08_06060) ciaC 1182470..1182790 (+) 321 WP_002876791.1 invasion antigen CiaC -
  QMK08_RS06065 (QMK08_06065) hemE 1182970..1183992 (+) 1023 WP_002876790.1 uroporphyrinogen decarboxylase -
  QMK08_RS06070 (QMK08_06070) - 1183989..1184891 (+) 903 WP_002866239.1 radical SAM protein -
  QMK08_RS06075 (QMK08_06075) - 1184888..1186084 (-) 1197 WP_012006741.1 hypothetical protein -
  QMK08_RS06080 (QMK08_06080) uvrC 1186086..1187888 (-) 1803 WP_002876788.1 excinuclease ABC subunit UvrC Machinery gene
  QMK08_RS06085 (QMK08_06085) - 1187881..1188375 (-) 495 WP_002866244.1 hypothetical protein -
  QMK08_RS06090 (QMK08_06090) guaA 1188514..1190049 (+) 1536 WP_002866245.1 glutamine-hydrolyzing GMP synthase -
  QMK08_RS06095 (QMK08_06095) - 1190135..1191595 (+) 1461 WP_002866246.1 hypothetical protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69748.82 Da        Isoelectric Point: 9.3105

>NTDB_id=763044 QMK08_RS06080 WP_002876788.1 1186086..1187888(-) (uvrC) [Campylobacter jejuni strain SKBC41]
MTKENLENELKTLPNSAGVYQYFNQEGKLLYVGKAKNLKNRVKSYFAFTPNLHANPRNSLRIQKMIEETVHLEFITTNSE
ADALILENSFIKQLHPKYNILLRDDKTYPYIYVDFEEEFPRFEITRKLVKKSKIKYFGPFFKGARELLDALYLYYPLKQK
ASCKSPCIFYQISRCLAPCDKRISREKYLEILDEAMHALLNPSILIKNLEKQMLVLAQNENYEEAAKVRDQIVTIKDLEV
KVEIDIAKLEDFEVFALAFENSMLSTLRFVVQNGKIISVNSKITPIKNDIQWDKNEIYKQLILENFSMDIPLLANVIYVY
EEFEDRMLLEEILSQRFDKKISIKIPKIGEKRRICDLAFQNALLNIEKEQKNHDFTIQKELKSYFELENLPNDIEIFDNS
HLQGMANVGAMVTYSANSWDKSKYRKFHLKHKNDYDQMREVLMRRALDFDKIPPPDLWLIDGGKALLDLAKEIIVSSGAN
VDILAISKEKIDAKAHRAKGGARDKIHSLKGEFSLSINDKKLQFLQKLRDEAHRFAISFHQNTKKKQDLNSSKLVNLGLS
SGVIQKLLAYYGNFESIYKADFKDLAMLVGKKVAQKIKEN

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=763044 QMK08_RS06080 WP_002876788.1 1186086..1187888(-) (uvrC) [Campylobacter jejuni strain SKBC41]
TTGACTAAAGAGAATTTAGAAAATGAGTTAAAAACTCTTCCTAATAGTGCTGGAGTGTATCAATATTTTAATCAAGAAGG
AAAGCTTTTATATGTAGGTAAGGCTAAAAATCTTAAAAATCGTGTCAAATCTTATTTCGCTTTTACTCCAAATTTACATG
CAAACCCAAGAAATTCTTTAAGAATTCAAAAAATGATTGAAGAAACAGTGCATTTGGAATTTATCACTACTAATTCAGAA
GCCGATGCTTTGATTTTGGAAAATTCTTTTATCAAACAACTGCATCCAAAATATAATATTTTACTAAGAGATGATAAAAC
TTATCCTTATATTTATGTGGATTTTGAAGAAGAATTTCCACGCTTTGAGATCACTAGAAAATTAGTAAAAAAAAGCAAAA
TTAAATATTTTGGCCCTTTTTTTAAAGGCGCTAGAGAGCTTTTAGATGCGCTTTATTTATACTATCCTTTAAAGCAAAAA
GCAAGTTGTAAATCCCCTTGTATTTTTTATCAAATTTCTCGTTGTCTTGCGCCTTGTGATAAACGCATTAGCAGGGAAAA
ATACCTTGAAATTTTAGATGAGGCTATGCACGCGCTTTTAAATCCTAGTATTTTAATAAAAAATTTAGAAAAACAAATGC
TTGTTTTAGCACAGAATGAAAATTATGAAGAAGCAGCTAAAGTAAGAGATCAGATTGTAACGATTAAGGATTTAGAAGTT
AAGGTTGAAATAGATATTGCAAAATTAGAAGATTTTGAAGTATTTGCTTTAGCTTTTGAAAATTCCATGCTTTCAACCTT
GCGTTTTGTAGTGCAAAATGGAAAAATTATCAGTGTAAATTCTAAGATTACTCCTATAAAAAATGATATACAATGGGATA
AAAATGAAATTTATAAGCAACTGATTTTAGAAAATTTTAGCATGGATATTCCTTTGCTTGCAAATGTTATTTATGTTTAT
GAAGAATTTGAAGATAGAATGCTTTTAGAAGAAATTTTAAGCCAAAGGTTTGATAAAAAAATCAGTATTAAAATCCCTAA
AATAGGAGAAAAAAGAAGAATTTGTGATTTGGCTTTTCAAAATGCCCTTTTAAATATAGAAAAAGAGCAAAAAAATCATG
ATTTTACTATACAAAAAGAATTAAAGTCTTATTTTGAGCTTGAAAATTTACCAAATGATATAGAAATTTTTGATAATTCT
CATTTGCAAGGCATGGCAAATGTTGGAGCTATGGTAACTTATAGTGCAAATTCTTGGGATAAGTCAAAATATCGCAAATT
TCATTTAAAACATAAAAATGATTATGATCAAATGCGTGAAGTTTTAATGCGTAGGGCTTTGGACTTTGATAAAATACCCC
CTCCTGATTTATGGCTTATAGATGGAGGCAAGGCTTTGCTTGATTTGGCTAAAGAAATCATTGTAAGTAGTGGGGCAAAT
GTCGATATTTTAGCTATTTCAAAAGAAAAAATCGATGCAAAAGCACATAGGGCTAAAGGAGGTGCTAGAGATAAAATTCA
TTCCTTAAAAGGAGAATTTAGCCTAAGTATTAACGATAAAAAACTACAATTCTTACAGAAATTAAGAGATGAAGCGCATC
GTTTTGCTATCAGCTTTCATCAAAATACTAAGAAAAAACAGGACTTGAATAGTTCTAAGCTTGTAAATTTAGGACTTAGT
TCAGGGGTTATACAAAAACTTTTAGCGTATTATGGAAATTTTGAATCTATATATAAGGCTGATTTTAAAGATCTTGCAAT
GCTTGTAGGCAAGAAAGTGGCACAAAAGATAAAGGAAAATTGA

Domains

Predicted by InterProScan.

UvrB/uvrC motif (UVR)

(205-236)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(383-537)

GIY-YIG catalytic domain (GIY-YIG)

(18-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Helicobacter pylori 26695

45.96

99

0.455