Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   OY559_RS15775 Genome accession   NZ_CP113783
Coordinates   3337373..3338638 (+) Length   421 a.a.
NCBI ID   WP_277727181.1    Uniprot ID   -
Organism   Pseudoxanthomonas sp. SE1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3332373..3343638
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OY559_RS15760 (OY559_15770) - 3334150..3334242 (+) 93 Protein_3096 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  OY559_RS15765 - 3334783..3335112 (+) 330 WP_277727177.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  OY559_RS15770 (OY559_15780) pilB 3335273..3337006 (+) 1734 WP_277727179.1 type IV-A pilus assembly ATPase PilB Machinery gene
  OY559_RS15775 (OY559_15785) pilC 3337373..3338638 (+) 1266 WP_277727181.1 type II secretion system F family protein Machinery gene
  OY559_RS15780 (OY559_15790) pilD 3338642..3339505 (+) 864 WP_277727182.1 A24 family peptidase Machinery gene
  OY559_RS15785 (OY559_15795) coaE 3339590..3340237 (+) 648 WP_277727185.1 dephospho-CoA kinase -
  OY559_RS15790 (OY559_15800) - 3340395..3340688 (-) 294 WP_277727187.1 transposase -
  OY559_RS15795 (OY559_15805) - 3341168..3342121 (-) 954 WP_277727189.1 Nudix family hydrolase -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 46048.33 Da        Isoelectric Point: 10.1869

>NTDB_id=763045 OY559_RS15775 WP_277727181.1 3337373..3338638(+) (pilC) [Pseudoxanthomonas sp. SE1]
MAVTRSAAKKAASAPVRENPLNLFVWEGTDKRGVKMKGEQQSKNANFLRAELRKQGITPNVVKVKGKPLFGSAGKPVTPK
DIAFFSRQMATMMKSGVPIVSSLEIIESGQKNIRMKKMVEQIRFDIEGGSSLHEAISKHPVQFDELYRNLVRAGESAGVL
ETVLETIANYKENIEALKGKIKKALFYPAAVIAVAILVTSVILMFVIPEFEKTFSSFGTELPAFTQMIMAASRIMVSWWW
AMLLVVAGSIFGTLFLFKRSPAFQHAVDKLILKVPVIGQIMHNSAVARFARTTAVTFKAGVPLVEALDTVAGATGNTVYE
KAVHRMRDDVSVGYPLNMAMKQTQLFPHMVVQMTAIGEEAGALDTMLFKVAEYFEQEVNNAVDALSSLIEPFIMVIIGVL
VGGLVVGMYLPIFKIAATVVG

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=763045 OY559_RS15775 WP_277727181.1 3337373..3338638(+) (pilC) [Pseudoxanthomonas sp. SE1]
ATGGCCGTGACCCGTTCCGCCGCCAAGAAAGCCGCCTCCGCGCCCGTCCGCGAGAACCCGCTGAACCTGTTCGTCTGGGA
GGGCACCGACAAGCGCGGCGTCAAGATGAAGGGCGAGCAGCAGTCAAAGAACGCCAACTTCCTGCGCGCCGAGCTGCGCA
AGCAGGGCATCACGCCCAACGTGGTCAAGGTGAAGGGGAAGCCGCTGTTCGGCTCCGCCGGCAAGCCGGTAACGCCGAAG
GACATCGCCTTCTTCAGCCGCCAGATGGCGACGATGATGAAATCCGGCGTGCCGATCGTGTCGTCGCTGGAGATCATCGA
AAGCGGGCAGAAAAACATCCGCATGAAGAAGATGGTCGAGCAGATCCGTTTCGACATCGAAGGCGGCTCCTCGCTGCACG
AAGCGATCAGCAAGCATCCCGTTCAGTTCGACGAGCTGTACCGCAACCTGGTACGGGCAGGCGAGTCGGCCGGTGTGCTG
GAGACGGTGCTGGAGACCATCGCCAACTACAAGGAAAACATCGAAGCCCTCAAGGGCAAGATCAAGAAGGCGCTGTTCTA
CCCCGCGGCGGTGATCGCGGTCGCCATTCTGGTCACCTCTGTGATCCTGATGTTCGTGATCCCGGAATTCGAGAAGACCT
TCTCCAGCTTCGGCACCGAACTGCCCGCGTTCACCCAGATGATCATGGCTGCCTCACGCATCATGGTCAGTTGGTGGTGG
GCAATGTTGCTCGTTGTAGCTGGCAGCATTTTCGGGACGCTGTTCCTCTTCAAGCGGTCTCCCGCTTTCCAGCATGCGGT
GGACAAGTTGATCCTGAAGGTGCCGGTGATCGGCCAGATCATGCATAACTCGGCCGTCGCCCGCTTCGCCCGCACCACCG
CCGTGACCTTCAAGGCCGGCGTGCCGCTGGTCGAAGCCCTGGACACCGTGGCCGGCGCCACCGGCAACACCGTGTACGAA
AAGGCCGTACACCGCATGCGCGATGACGTGTCGGTGGGCTACCCGCTGAACATGGCGATGAAGCAGACCCAGCTGTTCCC
GCACATGGTGGTGCAGATGACCGCCATCGGCGAGGAAGCCGGTGCACTGGACACCATGCTGTTCAAGGTGGCCGAGTACT
TCGAGCAGGAGGTCAACAACGCGGTGGATGCGCTGTCCAGCCTGATCGAGCCCTTCATCATGGTCATCATCGGCGTGCTG
GTCGGTGGCCTCGTTGTTGGCATGTACCTGCCCATCTTCAAGATCGCGGCGACGGTGGTCGGCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(289-411)

Type II secretion system (T2SS), protein F (T2SSF)

(85-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

50.75

95.012

0.482
  pilC Pseudomonas stutzeri DSM 10701

51.005

94.537

0.482
  pilC Acinetobacter baumannii D1279779

48.792

98.337

0.48
  pilC Acinetobacter baylyi ADP1

48.309

98.337

0.475
  pilG Neisseria gonorrhoeae MS11

43.216

94.537

0.409
  pilG Neisseria meningitidis 44/76-A

42.714

94.537

0.404
  pilC Vibrio cholerae strain A1552

39.25

95.012

0.373