Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NM686_RS15915 Genome accession   NZ_CP113517
Coordinates   3385961..3386419 (-) Length   152 a.a.
NCBI ID   WP_255188834.1    Uniprot ID   -
Organism   Methylomonas rapida strain MP1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3380961..3391419
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NM686_RS15880 (NM686_015880) lplT 3381492..3382664 (+) 1173 WP_255188829.1 lysophospholipid transporter LplT -
  NM686_RS15885 (NM686_015885) - 3382645..3383232 (-) 588 WP_255188830.1 TetR/AcrR family transcriptional regulator -
  NM686_RS15890 (NM686_015890) - 3383304..3383798 (+) 495 WP_255188831.1 NUDIX domain-containing protein -
  NM686_RS15895 (NM686_015895) - 3383851..3384279 (-) 429 WP_255188832.1 Hsp20/alpha crystallin family protein -
  NM686_RS15905 (NM686_015905) - 3384560..3385213 (+) 654 WP_255188833.1 class I SAM-dependent methyltransferase -
  NM686_RS15910 (NM686_015910) - 3385306..3385850 (-) 545 Protein_3152 IS3 family transposase -
  NM686_RS15915 (NM686_015915) ssb 3385961..3386419 (-) 459 WP_255188834.1 single-stranded DNA-binding protein Machinery gene
  NM686_RS15920 (NM686_015920) - 3386455..3387840 (-) 1386 WP_255188835.1 MFS transporter -
  NM686_RS15925 (NM686_015925) uvrA 3388000..3390816 (+) 2817 WP_255188836.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 17134.99 Da        Isoelectric Point: 5.2855

>NTDB_id=762654 NM686_RS15915 WP_255188834.1 3385961..3386419(-) (ssb) [Methylomonas rapida strain MP1]
MLNKVMLIGRLGADPEIRYMPSGDPIATIRLATTRRWRDRNTNERKEETEWHRVVFFSGLAKTVGEYLKKGSQVYVEGRI
RTQKWQGQDGQDRYTTEIVADAMNMLDSRSGGTASYSDNTPPANSYDNRPSAPAGPQSAPPAYDDFDDDIPF

Nucleotide


Download         Length: 459 bp        

>NTDB_id=762654 NM686_RS15915 WP_255188834.1 3385961..3386419(-) (ssb) [Methylomonas rapida strain MP1]
ATGTTGAACAAAGTCATGTTGATCGGCCGACTTGGTGCTGATCCGGAAATTCGCTATATGCCCAGTGGTGATCCGATTGC
GACCATCCGCCTGGCGACGACTCGGCGATGGCGCGATCGCAATACCAATGAGCGCAAGGAAGAAACCGAATGGCATCGGG
TGGTATTTTTTAGCGGTTTGGCAAAAACCGTTGGGGAATACTTGAAGAAGGGCAGTCAGGTCTATGTGGAAGGCCGTATC
CGCACCCAGAAATGGCAGGGCCAGGACGGGCAAGACAGATACACGACCGAAATCGTCGCCGATGCGATGAATATGCTGGA
TAGCCGTAGCGGTGGCACCGCCAGTTACTCCGATAATACGCCACCTGCCAACAGCTATGACAATCGTCCATCGGCACCTG
CCGGTCCGCAATCGGCGCCGCCAGCGTATGACGATTTCGATGATGATATACCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

49.419

100

0.559
  ssb Glaesserella parasuis strain SC1401

46.067

100

0.539
  ssb Neisseria gonorrhoeae MS11

44.509

100

0.507
  ssb Neisseria meningitidis MC58

43.931

100

0.5
  ssb Latilactobacillus sakei subsp. sakei 23K

31.792

100

0.362