Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   OPT59_RS11295 Genome accession   NZ_CP125360
Coordinates   1717445..1718110 (-) Length   221 a.a.
NCBI ID   WP_012767419.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis strain UT_120444     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1712445..1723110
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OPT59_RS08590 (OPT59_08590) - 1715665..1716687 (-) 1023 Protein_1631 IS30 family transposase -
  OPT59_RS08595 (OPT59_08595) raiA 1716817..1717365 (-) 549 WP_014612499.1 ribosome-associated translation inhibitor RaiA -
  OPT59_RS11295 comFC/cflB 1717445..1718110 (-) 666 WP_012767419.1 ComF family protein Machinery gene
  OPT59_RS08605 (OPT59_08605) comFA/cflA 1718082..1719407 (-) 1326 WP_015017291.1 DEAD/DEAH box helicase Machinery gene
  OPT59_RS08610 (OPT59_08610) - 1719463..1720101 (+) 639 WP_015017292.1 YigZ family protein -
  OPT59_RS08615 (OPT59_08615) cysK 1720205..1721140 (+) 936 WP_003062335.1 cysteine synthase A -
  OPT59_RS08620 (OPT59_08620) - 1721292..1721651 (-) 360 WP_015017293.1 S1 RNA-binding domain-containing protein -
  OPT59_RS08625 (OPT59_08625) - 1721651..1723051 (-) 1401 WP_042357970.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25364.39 Da        Isoelectric Point: 8.7003

>NTDB_id=762554 OPT59_RS11295 WP_012767419.1 1717445..1718110(-) (comFC/cflB) [Streptococcus dysgalactiae subsp. equisimilis strain UT_120444]
MICLLCQQFSPLPLRITDILFLKPQTTTLCQECQQGFQKISFTSCQTCNAPSQSSPCSDCLEWKVKGYEVNHKSLYQYNA
AMKAYFSQYKFQGDYLLRHVFAQELAQVIKKDYPDFTPVPVPISKERYEERHFNQVTAILEAGNINYCMLFKRMDTSRQS
SKTKNERLLSKDAYRLSTLSELPAKILIIDDIYTTGSTIIALKKLLMHVGNSDIKSLSIAR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=762554 OPT59_RS11295 WP_012767419.1 1717445..1718110(-) (comFC/cflB) [Streptococcus dysgalactiae subsp. equisimilis strain UT_120444]
ATGATATGCCTCCTATGTCAACAATTTAGTCCATTACCCTTGCGAATAACGGATATTCTCTTTTTGAAACCTCAAACAAC
AACTCTCTGTCAGGAGTGTCAACAAGGGTTTCAAAAGATAAGCTTCACGAGTTGCCAAACCTGTAACGCTCCTTCCCAAA
GCTCTCCATGTTCTGATTGTTTAGAATGGAAAGTCAAAGGATACGAGGTTAATCACAAAAGTTTATATCAGTATAACGCT
GCTATGAAAGCTTATTTTAGCCAATATAAGTTTCAAGGAGACTACTTGCTAAGACATGTCTTTGCTCAAGAATTAGCCCA
AGTTATTAAAAAAGACTATCCAGATTTTACTCCTGTTCCAGTTCCTATCAGTAAGGAGCGTTATGAAGAACGTCATTTCA
ATCAAGTGACTGCTATACTTGAAGCAGGGAATATTAACTATTGCATGCTTTTTAAAAGAATGGATACTAGCCGTCAGTCT
TCTAAAACTAAAAATGAAAGATTATTATCCAAAGATGCCTATCGTCTCTCCACCCTCTCTGAATTACCAGCAAAAATCCT
CATTATTGATGATATTTACACTACCGGTAGCACCATTATCGCTTTGAAAAAACTATTAATGCATGTTGGAAATAGTGACA
TCAAAAGTTTGTCAATTGCACGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis NCTC 12261

41.629

100

0.416
  comFC/cflB Streptococcus mitis SK321

41.176

100

0.412
  comFC/cflB Streptococcus pneumoniae TIGR4

40.724

100

0.407
  comFC/cflB Streptococcus pneumoniae Rx1

40.271

100

0.403
  comFC/cflB Streptococcus pneumoniae D39

40.271

100

0.403
  comFC/cflB Streptococcus pneumoniae R6

40.271

100

0.403