Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   OVA33_RS09225 Genome accession   NZ_CP113515
Coordinates   1807826..1808470 (+) Length   214 a.a.
NCBI ID   WP_071181952.1    Uniprot ID   -
Organism   Bacillus sp. KICET-1     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1802826..1813470
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OVA33_RS09200 (OVA33_09205) - 1803226..1803567 (-) 342 WP_014418765.1 hypothetical protein -
  OVA33_RS09205 (OVA33_09210) degQ 1804032..1804172 (+) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  OVA33_RS09210 (OVA33_09215) comQ 1804303..1805289 (+) 987 WP_269321599.1 class 1 isoprenoid biosynthesis enzyme Regulator
  OVA33_RS09215 (OVA33_09220) comX 1805252..1805422 (+) 171 WP_025650218.1 competence pheromone ComX Regulator
  OVA33_RS09220 (OVA33_09225) comP 1805442..1807745 (+) 2304 WP_025650219.1 histidine kinase Regulator
  OVA33_RS09225 (OVA33_09230) comA 1807826..1808470 (+) 645 WP_071181952.1 response regulator transcription factor Regulator
  OVA33_RS09230 (OVA33_09235) - 1808492..1808875 (+) 384 WP_065180456.1 hotdog fold thioesterase -
  OVA33_RS09235 (OVA33_09240) mnhG 1808915..1809289 (-) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  OVA33_RS09240 (OVA33_09245) - 1809273..1809557 (-) 285 WP_012118311.1 Na(+)/H(+) antiporter subunit F1 -
  OVA33_RS09245 (OVA33_09250) - 1809557..1810033 (-) 477 WP_017419419.1 Na+/H+ antiporter subunit E -
  OVA33_RS09250 (OVA33_09255) - 1810039..1811520 (-) 1482 WP_128974217.1 Na+/H+ antiporter subunit D -
  OVA33_RS09255 (OVA33_09260) - 1811513..1811854 (-) 342 WP_022553706.1 Na(+)/H(+) antiporter subunit C -
  OVA33_RS09260 (OVA33_09265) - 1811854..1812285 (-) 432 WP_007613424.1 Na(+)/H(+) antiporter subunit B -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24312.74 Da        Isoelectric Point: 4.9953

>NTDB_id=762522 OVA33_RS09225 WP_071181952.1 1807826..1808470(+) (comA) [Bacillus sp. KICET-1]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSPPQSEQDRLTQRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=762522 OVA33_RS09225 WP_071181952.1 1807826..1808470(+) (comA) [Bacillus sp. KICET-1]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTTAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGCAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCATGTGCTGAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTCCCCCTCAAAGTGAGCAGGATCGGTTAACACAGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAACAAGCTGAATGTCGGCTCCCGCACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

85.514

100

0.855