Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   OPT59_RS07875 Genome accession   NZ_CP125360
Coordinates   1559710..1561371 (-) Length   553 a.a.
NCBI ID   WP_159338777.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis strain UT_120444     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1554710..1566371
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OPT59_RS07850 (OPT59_07850) - 1555753..1556028 (-) 276 WP_003044261.1 HU family DNA-binding protein -
  OPT59_RS07855 (OPT59_07855) - 1556127..1556714 (-) 588 WP_003053329.1 YpmS family protein -
  OPT59_RS07860 (OPT59_07860) - 1556692..1557534 (-) 843 WP_014612448.1 SGNH/GDSL hydrolase family protein -
  OPT59_RS07865 (OPT59_07865) - 1557527..1558366 (-) 840 WP_110407862.1 DegV family protein -
  OPT59_RS07870 (OPT59_07870) - 1558607..1559503 (-) 897 WP_015017213.1 LPXTG cell wall anchor domain-containing protein -
  OPT59_RS07875 (OPT59_07875) recN 1559710..1561371 (-) 1662 WP_159338777.1 DNA repair protein RecN Machinery gene
  OPT59_RS07880 (OPT59_07880) - 1561390..1561860 (-) 471 WP_003056949.1 arginine repressor -
  OPT59_RS07885 (OPT59_07885) - 1561847..1562674 (-) 828 WP_129321414.1 TlyA family RNA methyltransferase -
  OPT59_RS07890 (OPT59_07890) - 1562667..1563539 (-) 873 WP_003056941.1 polyprenyl synthetase family protein -
  OPT59_RS07895 (OPT59_07895) - 1563539..1563754 (-) 216 WP_002983901.1 exodeoxyribonuclease VII small subunit -
  OPT59_RS07900 (OPT59_07900) xseA 1563732..1565072 (-) 1341 WP_042357957.1 exodeoxyribonuclease VII large subunit -
  OPT59_RS07905 (OPT59_07905) - 1565223..1566068 (-) 846 WP_003056961.1 NAD(P)H-hydrate dehydratase -

Sequence

Protein


Download         Length: 553 a.a.        Molecular weight: 62285.49 Da        Isoelectric Point: 4.6452

>NTDB_id=762518 OPT59_RS07875 WP_159338777.1 1559710..1561371(-) (recN) [Streptococcus dysgalactiae subsp. equisimilis strain UT_120444]
MLLEISIKNFAIIEEISLNFENGMTVLTGETGAGKSIIIDAMNMMLGARASTEVIRRGANKAEIEGFFSVDATPELVACL
ESSGIAMEEELIIRRDIFANGRSVSRINGQMVNLATLKQVGQFLVDIHGQHDQEELMRPQLHQQILDAFGDKAFEQLKEN
YQLIFDRYKSLRRQVIDKQKNEKEHKDRIDMLAFQIAEIEVAALSRGEDDRLNQERDRLMNHKQIADTLTNAYVMLDNDD
FSSLSNIRSSMNDLLSIEQFDSEYKGMSTSISEAYYILEEVSKQLSDTIDQLDFDGGRLQEIEFRLDTLNSLTRKYGGNV
NDVLDYYDNIVKEYQLLTGDDLSSGDLESELKALEKQLVAAATNLSERRHQLAEQLEAEIKAELKELYMEKADFKVHFTT
SKFNRGGNESLEFYISTNPGEGFKPLVKVASGGELSRLMLAIKAAISRKEDKTSIVFDEVDTGVSGRVAQAIAQKIYKIG
RHGQVLAISHLPQVIAIADYQYFISKESKEESTVSKVRLLTSEERVEEIARMLAGADMTEAALTQARELLAKH

Nucleotide


Download         Length: 1662 bp        

>NTDB_id=762518 OPT59_RS07875 WP_159338777.1 1559710..1561371(-) (recN) [Streptococcus dysgalactiae subsp. equisimilis strain UT_120444]
ATGCTATTAGAAATTTCCATTAAAAATTTTGCCATTATTGAGGAAATCTCTCTGAATTTTGAAAATGGCATGACAGTTTT
GACAGGTGAAACAGGAGCTGGAAAGTCCATTATTATTGATGCCATGAATATGATGCTTGGTGCGCGTGCTAGTACAGAAG
TGATTCGTCGTGGAGCTAATAAAGCAGAAATTGAGGGGTTCTTTTCGGTAGATGCTACCCCAGAACTGGTTGCGTGTCTG
GAATCATCAGGTATTGCTATGGAAGAAGAACTGATTATTCGCCGGGATATCTTTGCCAATGGCAGAAGCGTGAGCCGCAT
TAATGGTCAGATGGTTAACCTAGCCACCTTAAAACAGGTCGGACAGTTTTTGGTAGATATTCATGGGCAACATGACCAAG
AAGAATTAATGCGACCACAGCTCCACCAGCAAATTTTGGACGCTTTTGGTGATAAGGCTTTTGAGCAATTGAAAGAGAAC
TATCAGCTTATTTTTGATCGTTATAAAAGCTTGCGTCGCCAGGTTATTGACAAACAAAAAAATGAAAAGGAACACAAAGA
TCGTATTGATATGTTGGCCTTTCAGATAGCAGAAATTGAAGTTGCTGCCTTGAGTCGAGGTGAGGACGACCGGTTAAATC
AAGAACGTGATCGCTTAATGAACCACAAACAAATTGCTGATACCCTGACCAATGCCTACGTCATGCTAGATAATGACGAT
TTTTCAAGTCTATCCAATATTCGCTCTAGCATGAATGACTTACTATCAATTGAGCAGTTTGATTCAGAATACAAAGGGAT
GTCGACTTCAATTTCTGAAGCCTATTATATTCTTGAAGAAGTGAGCAAGCAATTATCAGATACCATTGACCAACTGGATT
TTGATGGTGGGCGATTACAGGAAATTGAATTTCGCTTGGATACACTCAATAGCTTAACCCGTAAATACGGTGGTAATGTG
AATGATGTGCTTGACTACTACGATAATATCGTCAAAGAATACCAGCTATTAACAGGAGATGACTTGTCTTCAGGGGATCT
AGAATCAGAATTGAAAGCCTTAGAAAAACAATTGGTTGCTGCAGCCACTAACTTGAGTGAACGCCGCCATCAATTGGCGG
AGCAATTAGAAGCTGAGATTAAAGCTGAACTTAAGGAACTTTATATGGAAAAAGCAGATTTCAAAGTTCACTTTACCACA
TCAAAATTCAATCGTGGTGGTAATGAAAGCTTGGAATTTTACATCTCTACTAATCCAGGCGAAGGATTCAAACCCCTTGT
CAAGGTGGCTTCTGGAGGAGAGTTATCACGCCTTATGTTAGCCATCAAGGCTGCTATTTCTAGAAAAGAAGATAAGACGA
GTATTGTTTTTGATGAAGTAGATACAGGTGTTTCTGGTCGAGTTGCTCAAGCCATTGCCCAAAAGATTTATAAAATTGGG
CGACATGGGCAAGTTCTCGCTATTTCACACTTACCTCAAGTCATTGCCATCGCTGATTACCAGTATTTTATTTCTAAAGA
GAGTAAAGAAGAGTCCACTGTTTCGAAGGTAAGGTTGTTAACTTCTGAAGAACGTGTGGAAGAAATTGCCAGAATGCTTG
CTGGTGCAGACATGACAGAAGCTGCTCTCACTCAGGCTCGTGAATTACTGGCCAAACATTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

44.19

100

0.454