Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OWC53_RS18445 Genome accession   NZ_CP113504
Coordinates   4017478..4018041 (+) Length   187 a.a.
NCBI ID   WP_193398308.1    Uniprot ID   -
Organism   Pectobacterium brasiliense strain 21PCA_AGRO2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4012478..4023041
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OWC53_RS18435 (OWC53_18420) - 4013958..4014377 (-) 420 WP_039521522.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  OWC53_RS18440 (OWC53_18425) uvrA 4014393..4017227 (-) 2835 WP_268197759.1 excinuclease ABC subunit UvrA -
  OWC53_RS18445 (OWC53_18430) ssb 4017478..4018041 (+) 564 WP_193398308.1 single-stranded DNA-binding protein SSB1 Machinery gene
  OWC53_RS18450 (OWC53_18435) - 4018126..4018608 (+) 483 WP_193398307.1 hypothetical protein -
  OWC53_RS18455 (OWC53_18440) - 4018986..4019444 (+) 459 WP_193398306.1 GNAT family N-acetyltransferase -
  OWC53_RS18460 (OWC53_18445) - 4019532..4020569 (-) 1038 WP_268197760.1 LacI family DNA-binding transcriptional regulator -
  OWC53_RS18465 (OWC53_18450) - 4020569..4021621 (-) 1053 WP_014916590.1 carbohydrate ABC transporter permease -
  OWC53_RS18470 (OWC53_18455) - 4021630..4022628 (-) 999 WP_010279314.1 sugar ABC transporter permease -

Sequence

Protein


Download         Length: 187 a.a.        Molecular weight: 19835.73 Da        Isoelectric Point: 5.2456

>NTDB_id=762470 OWC53_RS18445 WP_193398308.1 4017478..4018041(+) (ssb) [Pectobacterium brasiliense strain 21PCA_AGRO2]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGALQTRKWADQAGVERYTTEVVVNVGGTMQMLGGRQGGGAPAGGGNAGGSQQQGGWGQPQQPQGGNQFSGGAQSQQRPA
QNSSSSQNNSPAQSNEPPMDFDDDIPF

Nucleotide


Download         Length: 564 bp        

>NTDB_id=762470 OWC53_RS18445 WP_193398308.1 4017478..4018041(+) (ssb) [Pectobacterium brasiliense strain 21PCA_AGRO2]
ATGGCCAGCAGAGGCGTTAATAAAGTGATTCTTGTCGGGAATCTGGGTCAAGACCCAGAAGTCCGCTATATGCCGAATGG
TGGTGCAGTTGCCAACATCACGCTGGCTACGTCGGAAAGCTGGCGTGACAAGCAAACCGGTGAGCAGAAAGAGAAGACCG
AATGGCACCGTGTCGTGCTGTTCGGCAAACTGGCAGAAGTCGCGGGCGAATACCTGCGCAAAGGCTCTCAGGTTTACATC
GAAGGCGCACTGCAAACCCGTAAATGGGCCGATCAGGCTGGCGTAGAGCGCTACACCACCGAAGTCGTTGTTAACGTCGG
CGGCACCATGCAGATGCTGGGTGGACGCCAGGGCGGCGGCGCACCAGCAGGCGGTGGCAATGCAGGTGGCAGTCAGCAAC
AAGGCGGTTGGGGTCAACCTCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCTCAACAGCGTCCGGCC
CAGAACTCATCTTCCTCACAAAATAATTCCCCAGCACAAAGCAACGAACCGCCAATGGATTTCGACGACGACATTCCGTT
CTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

71.958

100

0.727
  ssb Glaesserella parasuis strain SC1401

55.102

100

0.578
  ssb Neisseria meningitidis MC58

43.915

100

0.444
  ssb Neisseria gonorrhoeae MS11

43.915

100

0.444
  ssbA Bacillus subtilis subsp. subtilis str. 168

37.705

97.861

0.369