Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   OQH41_RS16345 Genome accession   NZ_CP113442
Coordinates   3445751..3446569 (-) Length   272 a.a.
NCBI ID   WP_000149376.1    Uniprot ID   A0A009TDY3
Organism   Acinetobacter baumannii strain C9     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3440751..3451569
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OQH41_RS16330 (OQH41_16330) pilE 3440977..3441402 (-) 426 WP_005127886.1 type IV pilin protein Machinery gene
  OQH41_RS16335 (OQH41_16335) pilY2 3441399..3441881 (-) 483 WP_001046423.1 type IV pilin protein Machinery gene
  OQH41_RS16340 (OQH41_16340) pilY1 3441894..3445739 (-) 3846 WP_025469982.1 PilC/PilY family type IV pilus protein Machinery gene
  OQH41_RS16345 (OQH41_16345) pilX 3445751..3446569 (-) 819 WP_000149376.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  OQH41_RS16350 (OQH41_16350) pilW 3446566..3447567 (-) 1002 WP_000079197.1 PilW family protein Machinery gene
  OQH41_RS16355 (OQH41_16355) pilV 3447568..3448128 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  OQH41_RS16360 (OQH41_16360) fimU 3448122..3448595 (-) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  OQH41_RS16365 (OQH41_16365) ispH 3448765..3449715 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  OQH41_RS16370 (OQH41_16370) gmk 3449838..3450467 (+) 630 WP_042052496.1 guanylate kinase -
  OQH41_RS16375 (OQH41_16375) rpoZ 3450540..3450818 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  OQH41_RS16380 (OQH41_16380) - 3450857..3450987 (+) 131 Protein_3196 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28858.69 Da        Isoelectric Point: 5.2557

>NTDB_id=762355 OQH41_RS16345 WP_000149376.1 3445751..3446569(-) (pilX) [Acinetobacter baumannii strain C9]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANYNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=762355 OQH41_RS16345 WP_000149376.1 3445751..3446569(-) (pilX) [Acinetobacter baumannii strain C9]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCGACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACTATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009TDY3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

98.897

100

0.989