Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   OQH41_RS16360 Genome accession   NZ_CP113442
Coordinates   3448122..3448595 (-) Length   157 a.a.
NCBI ID   WP_001214065.1    Uniprot ID   N9K1Q3
Organism   Acinetobacter baumannii strain C9     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3443122..3453595
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OQH41_RS16345 (OQH41_16345) pilX 3445751..3446569 (-) 819 WP_000149376.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  OQH41_RS16350 (OQH41_16350) pilW 3446566..3447567 (-) 1002 WP_000079197.1 PilW family protein Machinery gene
  OQH41_RS16355 (OQH41_16355) pilV 3447568..3448128 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  OQH41_RS16360 (OQH41_16360) fimU 3448122..3448595 (-) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  OQH41_RS16365 (OQH41_16365) ispH 3448765..3449715 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  OQH41_RS16370 (OQH41_16370) gmk 3449838..3450467 (+) 630 WP_042052496.1 guanylate kinase -
  OQH41_RS16375 (OQH41_16375) rpoZ 3450540..3450818 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  OQH41_RS16380 (OQH41_16380) - 3450857..3450987 (+) 131 Protein_3196 hypothetical protein -
  OQH41_RS16385 (OQH41_16385) - 3451027..3453132 (+) 2106 WP_001117590.1 RelA/SpoT family protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16837.43 Da        Isoelectric Point: 8.5355

>NTDB_id=762358 OQH41_RS16360 WP_001214065.1 3448122..3448595(-) (fimU) [Acinetobacter baumannii strain C9]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=762358 OQH41_RS16360 WP_001214065.1 3448122..3448595(-) (fimU) [Acinetobacter baumannii strain C9]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCGCCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGCCGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAATGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-143)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1Q3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

100

100

1