Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   OQH41_RS00780 Genome accession   NZ_CP113442
Coordinates   170081..171211 (-) Length   376 a.a.
NCBI ID   WP_265615299.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain C9     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 165081..176211
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OQH41_RS00755 (OQH41_00755) - 165256..166020 (-) 765 WP_000786955.1 AraC family transcriptional regulator -
  OQH41_RS00760 (OQH41_00760) - 166042..167256 (-) 1215 WP_000372838.1 MFS transporter -
  OQH41_RS00765 (OQH41_00765) - 167393..168043 (+) 651 WP_098715213.1 TetR/AcrR family transcriptional regulator -
  OQH41_RS00770 (OQH41_00770) - 168149..169069 (+) 921 WP_000084546.1 DMT family transporter -
  OQH41_RS00775 (OQH41_00775) - 169461..170030 (-) 570 WP_000633612.1 L-threonylcarbamoyladenylate synthase -
  OQH41_RS00780 (OQH41_00780) dprA 170081..171211 (-) 1131 WP_265615299.1 DNA-processing protein DprA Machinery gene
  OQH41_RS00785 (OQH41_00785) tsaP 171232..172386 (-) 1155 WP_000755280.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  OQH41_RS00790 (OQH41_00790) def 172509..173039 (+) 531 WP_001196539.1 peptide deformylase -
  OQH41_RS00795 (OQH41_00795) - 173076..173504 (+) 429 WP_000231981.1 DUF2946 family protein -
  OQH41_RS00800 (OQH41_00800) - 173577..175658 (+) 2082 WP_001120682.1 TonB-dependent copper receptor -
  OQH41_RS00805 (OQH41_00805) - 175708..175914 (+) 207 WP_000182542.1 hypothetical protein -

Sequence


Protein


Download         Length: 376 a.a.        Molecular weight: 41913.50 Da        Isoelectric Point: 6.4539

>NTDB_id=762321 OQH41_RS00780 WP_265615299.1 170081..171211(-) (dprA) [Acinetobacter baumannii strain C9]
MLTQLSSHHYHTLKVWYLVQHSLVTFKKIIDYFGNCEKATQPDGLAKWSSLGLHANHLKRVNEFQTPQGQTQFEQLVQQV
CQYTDFILTPDDSGYPIQLLPYTDHPPIIFGKGQAQALLQPQIAIVGSRKPSPHGRQVAYDFAYYLSEKGFFISSGLAYG
IDEAAHQGASAHQRTIAVTGTGLDTTYPAQNKKLAEHILAQNGAIITEFLPGTPPLQQHFPRRNRIVSGLSLGVLVVEAT
LKSGSLITANKAAEQGKTVFAIPGHIYSEFHQGCHQLIREGAILIDHPEQIIEDLALPTQWQSQQQNQTEEANTNTPEIP
EHLIDLYQSLDWVGQNIDQLVIHHNVPVSELTSSLMELELLGLCMQQSGLYLRCRS

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=762321 OQH41_RS00780 WP_265615299.1 170081..171211(-) (dprA) [Acinetobacter baumannii strain C9]
ATGCTCACTCAACTTTCTTCACACCACTACCACACACTTAAAGTGTGGTATTTGGTGCAGCACTCTTTAGTCACCTTTAA
AAAAATTATTGATTATTTTGGAAATTGTGAAAAAGCCACTCAACCTGATGGTTTAGCAAAGTGGTCCTCTCTGGGGCTAC
ATGCTAATCACTTAAAACGTGTAAACGAATTTCAAACGCCCCAAGGTCAAACGCAGTTTGAACAACTTGTACAACAAGTT
TGTCAGTATACGGATTTTATTTTAACGCCGGATGACTCAGGCTATCCCATTCAATTACTTCCTTATACAGATCACCCACC
TATTATTTTTGGGAAAGGTCAAGCGCAAGCTTTATTGCAACCTCAAATTGCGATTGTCGGTAGCCGAAAACCAAGCCCAC
ATGGACGACAGGTCGCTTATGATTTTGCCTATTACTTAAGTGAAAAGGGCTTTTTCATTAGTAGCGGTCTGGCTTATGGC
ATTGATGAAGCCGCTCATCAAGGTGCATCTGCTCATCAACGTACCATTGCAGTGACGGGTACGGGCTTAGACACTACTTA
TCCAGCTCAAAATAAAAAACTTGCAGAACATATTTTGGCTCAAAACGGCGCCATTATTACTGAGTTTTTACCGGGTACAC
CACCATTACAACAGCATTTTCCACGTAGAAACCGAATTGTCAGCGGTTTGAGTTTAGGCGTTTTGGTGGTAGAAGCGACA
TTAAAAAGCGGCTCACTCATCACGGCCAATAAAGCTGCTGAACAAGGTAAAACCGTATTCGCGATTCCGGGCCATATTTA
TAGCGAGTTTCATCAAGGATGCCATCAACTTATCCGTGAAGGTGCAATTTTAATCGACCATCCTGAACAGATTATTGAGG
ATCTTGCTTTACCAACCCAATGGCAAAGTCAGCAACAAAATCAAACTGAAGAAGCTAATACGAATACTCCAGAAATTCCT
GAGCATTTGATTGACCTTTATCAGTCTTTAGACTGGGTAGGACAAAATATTGACCAGCTTGTAATTCATCATAATGTGCC
GGTTTCTGAACTGACCTCTTCACTAATGGAACTAGAACTACTCGGTTTATGTATGCAACAATCAGGGCTGTATTTACGTT
GTCGTTCTTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii D1279779

97.34

100

0.973

  dprA Acinetobacter baumannii strain A118

97.074

100

0.971

  dprA Acinetobacter baylyi ADP1

70.341

100

0.713

  dprA Vibrio cholerae strain A1552

42.9

88.032

0.378