Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   QL281_RS18745 Genome accession   NZ_CP125292
Coordinates   3522588..3523505 (+) Length   305 a.a.
NCBI ID   WP_003232954.1    Uniprot ID   A0A9W5LHY5
Organism   Bacillus subtilis strain SRCM117797     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 3517588..3528505
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QL281_RS18730 (QL281_18730) trpS 3518168..3519160 (-) 993 WP_041336661.1 tryptophan--tRNA ligase -
  QL281_RS18735 (QL281_18735) oppA 3519904..3521541 (+) 1638 WP_003232957.1 oligopeptide ABC transporter substrate-binding protein OppA -
  QL281_RS18740 (QL281_18740) oppB 3521649..3522584 (+) 936 WP_003245554.1 oligopeptide ABC transporter permease OppB -
  QL281_RS18745 (QL281_18745) amiD 3522588..3523505 (+) 918 WP_003232954.1 oligopeptide ABC transporter permease OppC Regulator
  QL281_RS18750 (QL281_18750) oppD 3523510..3524586 (+) 1077 WP_080333450.1 oligopeptide ABC transporter ATP-binding protein OppD -
  QL281_RS18755 (QL281_18755) oppF 3524588..3525505 (+) 918 WP_003245567.1 oligopeptide ABC transporter ATP-binding protein OppF -
  QL281_RS18760 (QL281_18760) yjbB 3525612..3526829 (+) 1218 WP_080316915.1 MFS transporter -
  QL281_RS18765 (QL281_18765) yjbC 3526994..3527572 (+) 579 WP_144459369.1 GNAT family N-acetyltransferase -
  QL281_RS18770 (QL281_18770) spx 3527753..3528148 (+) 396 WP_014476435.1 transcriptional regulator Spx -

Sequence

Protein


Download         Length: 305 a.a.        Molecular weight: 33621.12 Da        Isoelectric Point: 10.2873

>NTDB_id=762315 QL281_RS18745 WP_003232954.1 3522588..3523505(+) (amiD) [Bacillus subtilis strain SRCM117797]
MQNIPKNMFEPAAANAGDAEKISKKSLSLWKDAMLRFRSNKLAMVGLIIIVLIILMAIFAPMFSRYDYSTTNLLNADKPP
SKDHWFGTDDLGRDIFVRTWVGARISIFIGVAAAVLDLLIGVIWGSISGFRGGRTDEIMMRIADILWAVPSLLMVILLMV
VLPKGLFTIIIAMTITGWINMARIVRGQVLQLKNQEYVLASQTLGAKTSRLLFKHIVPNAMGSILVTMTLTVPTAIFTEA
FLSYLGLGVPAPLASWGTMASDGLPALTYYPWRLFFPAGFICITMFGFNVVGDGLRDALDPKLRK

Nucleotide


Download         Length: 918 bp        

>NTDB_id=762315 QL281_RS18745 WP_003232954.1 3522588..3523505(+) (amiD) [Bacillus subtilis strain SRCM117797]
ATGCAGAACATTCCAAAAAACATGTTTGAACCAGCCGCAGCGAATGCCGGCGATGCAGAAAAAATAAGTAAAAAGAGCCT
TTCCCTCTGGAAAGATGCGATGCTTCGCTTCCGCAGCAATAAGCTTGCAATGGTCGGGCTTATCATTATCGTACTTATTA
TCCTTATGGCAATTTTTGCGCCGATGTTCTCAAGGTATGATTATTCAACTACTAATCTCTTAAATGCGGATAAGCCGCCT
TCAAAAGATCACTGGTTCGGAACAGATGATCTTGGACGGGACATTTTCGTCCGTACATGGGTAGGGGCGCGAATCTCAAT
CTTTATCGGTGTCGCAGCCGCTGTTCTTGATTTGCTGATCGGTGTTATTTGGGGGAGCATTTCAGGCTTCCGCGGAGGCA
GAACGGACGAAATCATGATGCGTATCGCTGATATCCTTTGGGCAGTTCCTTCATTATTAATGGTTATCTTACTGATGGTT
GTTCTTCCGAAAGGTCTATTTACGATTATTATTGCCATGACGATTACAGGCTGGATTAATATGGCCAGAATCGTGCGCGG
ACAAGTGCTGCAGCTGAAGAATCAAGAGTATGTGCTTGCTTCACAGACACTGGGTGCAAAAACATCCCGTCTTCTGTTTA
AACATATCGTGCCAAACGCAATGGGTTCTATTTTGGTCACGATGACACTGACAGTTCCTACTGCGATTTTCACAGAAGCC
TTTTTAAGCTATTTGGGACTTGGTGTTCCGGCTCCGCTGGCAAGCTGGGGAACGATGGCTTCTGACGGATTGCCTGCATT
GACCTATTATCCGTGGCGTTTATTCTTCCCTGCCGGATTTATCTGCATTACAATGTTTGGTTTCAACGTTGTCGGCGACG
GATTAAGAGACGCATTGGATCCTAAGTTACGTAAATAA

Domains

Predicted by InterProScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(121-305)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9W5LHY5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus thermophilus LMG 18311

35.922

100

0.364
  amiD Streptococcus thermophilus LMD-9

35.922

100

0.364