Detailed information
Bioinformatically predicted
Overview
| Name | ruvB | Type | Machinery gene |
| Locus tag | LDM87_RS05365 | Genome accession | NZ_AP024964 |
| Coordinates | 1134748..1135758 (+) | Length | 336 a.a. |
| NCBI ID | WP_000664472.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain #6 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 1129748..1140758
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LDM87_RS05340 (OHP006_10720) | - | 1129940..1131262 (-) | 1323 | WP_223892663.1 | M23 family metallopeptidase | - |
| LDM87_RS05345 (OHP006_10730) | - | 1131272..1132210 (-) | 939 | WP_223892664.1 | outer membrane beta-barrel protein | - |
| LDM87_RS05350 (OHP006_10740) | - | 1132219..1133073 (-) | 855 | WP_223892665.1 | outer membrane beta-barrel protein | - |
| LDM87_RS05355 (OHP006_10750) | - | 1133063..1133785 (-) | 723 | WP_223892666.1 | hypothetical protein | - |
| LDM87_RS05360 (OHP006_10760) | panB | 1133935..1134747 (+) | 813 | WP_223892667.1 | 3-methyl-2-oxobutanoate hydroxymethyltransferase | - |
| LDM87_RS05365 (OHP006_10770) | ruvB | 1134748..1135758 (+) | 1011 | WP_000664472.1 | Holliday junction branch migration DNA helicase RuvB | Machinery gene |
| LDM87_RS05370 (OHP006_10780) | tatB | 1135826..1136302 (+) | 477 | WP_223887775.1 | Sec-independent protein translocase protein TatB | - |
| LDM87_RS05375 (OHP006_10790) | tatC | 1136295..1137056 (+) | 762 | WP_000461148.1 | twin-arginine translocase subunit TatC | - |
| LDM87_RS05380 (OHP006_10800) | queA | 1137057..1138094 (+) | 1038 | WP_220871226.1 | tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA | - |
| LDM87_RS05385 (OHP006_10810) | rsmG | 1138091..1138627 (+) | 537 | WP_001068819.1 | 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG | - |
| LDM87_RS05390 (OHP006_10820) | - | 1138621..1138863 (+) | 243 | WP_000944394.1 | PP0621 family protein | - |
| LDM87_RS05395 (OHP006_10830) | - | 1138866..1139273 (+) | 408 | WP_000906122.1 | hypothetical protein | - |
| LDM87_RS05405 (OHP006_10840) | - | 1139405..1140007 (-) | 603 | WP_223892668.1 | outer membrane protein | - |
| LDM87_RS05410 (OHP006_10850) | chpA | 1140298..1140672 (+) | 375 | WP_015086992.1 | chemotaxis response regulator CheY | Regulator |
Sequence
Protein
Download Length: 336 a.a. Molecular weight: 37291.27 Da Isoelectric Point: 6.0715
>NTDB_id=76228 LDM87_RS05365 WP_000664472.1 1134748..1135758(+) (ruvB) [Helicobacter pylori strain #6]
MKERIVNLETLDFETSQEVSLRPNLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN
IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATT
RAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAAAKLNQDIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLM
DLNITLHALNELGVNELGFDEADLAYLSLLANAQGRPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATPK
THALLKIPTLNPQTLF
MKERIVNLETLDFETSQEVSLRPNLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN
IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATT
RAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAAAKLNQDIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLM
DLNITLHALNELGVNELGFDEADLAYLSLLANAQGRPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATPK
THALLKIPTLNPQTLF
Nucleotide
Download Length: 1011 bp
>NTDB_id=76228 LDM87_RS05365 WP_000664472.1 1134748..1135758(+) (ruvB) [Helicobacter pylori strain #6]
ATGAAAGAACGGATAGTCAATTTAGAAACTTTGGATTTTGAAACTTCTCAAGAAGTGAGTTTGCGTCCTAATCTTTGGGA
AGATTTTATCGGTCAAGAAAAGATTAAAAGCAATTTGCAAATTTCTATTTGTGCGGCTAAAAAACGCCAAGAAAGTTTGG
ATCACATGCTCTTTTTTGGCCCACCCGGTTTGGGTAAAACTTCAATAAGCCATATCATCGCTAAAGAAATGGAAACCAAT
ATCAAAATCACTGCCGCTCCCATGATAGAAAAAAGCGGTGATTTGGCCGCCATTTTGACCAATTTGCAAGCTAAAGACAT
TCTTTTTATTGATGAAATCCACCGGCTTAGCCCAGCGATTGAAGAGGTTTTATACCCGGCTATGGAGGATTTCAGGCTGG
ATATTATCATAGGCTCAGGCCCGGCCGCTCAAACCATTAAAATTGATTTGCCCCCTTTCACTCTCATCGGTGCTACCACT
AGAGCCGGAATGCTCTCTAACCCCTTAAGAGACAGATTTGGCATGAGCTTTAGAATGCAATTTTATAGCCCTAGCGAACT
AGCCCTTATCATCAAAAAAGCCGCCGCCAAACTCAACCAAGACATCAAAGAAGAAAGCGCTGATGAAATCGCTAAAAGGA
GTAGAGGCACGCCAAGGATCGCTTTAAGGCTTTTAAAAAGGGTGCGCGATTTTGCGTTAGTCAAAAATTCAAGCTTGATG
GATTTAAACATCACTTTGCATGCTTTGAATGAATTAGGCGTGAATGAATTAGGCTTTGATGAAGCGGATTTGGCGTATTT
GTCTTTGTTGGCTAACGCTCAAGGACGACCGGTGGGTTTGAACACGATTGCAGCATCTATGAGAGAAGATGAAGGCACGA
TTGAAGATGTGATTGAGCCTTTTTTACTCGCTAATGGTTATTTAGAACGCACCGCTAAAGGCAGAATCGCCACGCCTAAA
ACCCATGCACTTTTAAAAATCCCCACTTTAAACCCTCAAACTTTATTTTAA
ATGAAAGAACGGATAGTCAATTTAGAAACTTTGGATTTTGAAACTTCTCAAGAAGTGAGTTTGCGTCCTAATCTTTGGGA
AGATTTTATCGGTCAAGAAAAGATTAAAAGCAATTTGCAAATTTCTATTTGTGCGGCTAAAAAACGCCAAGAAAGTTTGG
ATCACATGCTCTTTTTTGGCCCACCCGGTTTGGGTAAAACTTCAATAAGCCATATCATCGCTAAAGAAATGGAAACCAAT
ATCAAAATCACTGCCGCTCCCATGATAGAAAAAAGCGGTGATTTGGCCGCCATTTTGACCAATTTGCAAGCTAAAGACAT
TCTTTTTATTGATGAAATCCACCGGCTTAGCCCAGCGATTGAAGAGGTTTTATACCCGGCTATGGAGGATTTCAGGCTGG
ATATTATCATAGGCTCAGGCCCGGCCGCTCAAACCATTAAAATTGATTTGCCCCCTTTCACTCTCATCGGTGCTACCACT
AGAGCCGGAATGCTCTCTAACCCCTTAAGAGACAGATTTGGCATGAGCTTTAGAATGCAATTTTATAGCCCTAGCGAACT
AGCCCTTATCATCAAAAAAGCCGCCGCCAAACTCAACCAAGACATCAAAGAAGAAAGCGCTGATGAAATCGCTAAAAGGA
GTAGAGGCACGCCAAGGATCGCTTTAAGGCTTTTAAAAAGGGTGCGCGATTTTGCGTTAGTCAAAAATTCAAGCTTGATG
GATTTAAACATCACTTTGCATGCTTTGAATGAATTAGGCGTGAATGAATTAGGCTTTGATGAAGCGGATTTGGCGTATTT
GTCTTTGTTGGCTAACGCTCAAGGACGACCGGTGGGTTTGAACACGATTGCAGCATCTATGAGAGAAGATGAAGGCACGA
TTGAAGATGTGATTGAGCCTTTTTTACTCGCTAATGGTTATTTAGAACGCACCGCTAAAGGCAGAATCGCCACGCCTAAA
ACCCATGCACTTTTAAAAATCCCCACTTTAAACCCTCAAACTTTATTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ruvB | Helicobacter pylori 26695 |
97.917 |
100 |
0.979 |
| ruvB | Bacillus subtilis subsp. subtilis str. 168 |
53.56 |
96.131 |
0.515 |
| ruvB | Streptococcus pneumoniae TIGR4 |
50.464 |
96.131 |
0.485 |
| ruvB | Streptococcus pneumoniae R6 |
50.464 |
96.131 |
0.485 |
| ruvB | Streptococcus pneumoniae D39 |
50.464 |
96.131 |
0.485 |
| ruvB | Synechocystis sp. PCC 6803 |
50.789 |
94.345 |
0.479 |