Detailed information    

insolico Bioinformatically predicted

Overview

Name   chpA   Type   Regulator
Locus tag   LDM87_RS05410 Genome accession   NZ_AP024964
Coordinates   1140298..1140672 (+) Length   124 a.a.
NCBI ID   WP_015086992.1    Uniprot ID   -
Organism   Helicobacter pylori strain #6     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 1135298..1145672
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDM87_RS05370 (OHP006_10780) tatB 1135826..1136302 (+) 477 WP_223887775.1 Sec-independent protein translocase protein TatB -
  LDM87_RS05375 (OHP006_10790) tatC 1136295..1137056 (+) 762 WP_000461148.1 twin-arginine translocase subunit TatC -
  LDM87_RS05380 (OHP006_10800) queA 1137057..1138094 (+) 1038 WP_220871226.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  LDM87_RS05385 (OHP006_10810) rsmG 1138091..1138627 (+) 537 WP_001068819.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  LDM87_RS05390 (OHP006_10820) - 1138621..1138863 (+) 243 WP_000944394.1 PP0621 family protein -
  LDM87_RS05395 (OHP006_10830) - 1138866..1139273 (+) 408 WP_000906122.1 hypothetical protein -
  LDM87_RS05405 (OHP006_10840) - 1139405..1140007 (-) 603 WP_223892668.1 outer membrane protein -
  LDM87_RS05410 (OHP006_10850) chpA 1140298..1140672 (+) 375 WP_015086992.1 chemotaxis response regulator CheY Regulator
  LDM87_RS05415 (OHP006_10860) prmA 1140685..1141662 (+) 978 WP_223892669.1 50S ribosomal protein L11 methyltransferase -
  LDM87_RS05420 (OHP006_10870) ftsH 1141671..1143569 (+) 1899 WP_223892670.1 ATP-dependent zinc metalloprotease FtsH -
  LDM87_RS05425 - 1143572..1143826 (+) 255 WP_001203150.1 hypothetical protein -
  LDM87_RS05430 (OHP006_10880) pssA 1143816..1144529 (+) 714 WP_001122213.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -

Sequence

Protein


Download         Length: 124 a.a.        Molecular weight: 13833.13 Da        Isoelectric Point: 4.6381

>NTDB_id=76229 LDM87_RS05410 WP_015086992.1 1140298..1140672(+) (chpA) [Helicobacter pylori strain #6]
MKLLVVDDSSTMRRIIGNTLSRLGYEDILEAEHGVEALEKLNANPDIKVLITDWNMPEMNGLDLVIKVRADERFKEIPII
MITTEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVVLGTND

Nucleotide


Download         Length: 375 bp        

>NTDB_id=76229 LDM87_RS05410 WP_015086992.1 1140298..1140672(+) (chpA) [Helicobacter pylori strain #6]
TTGAAACTACTGGTAGTAGATGATAGCTCAACTATGAGGAGAATTATTGGAAACACACTTTCACGCTTAGGCTATGAAGA
TATTTTAGAAGCCGAACATGGGGTGGAAGCTTTGGAGAAACTAAACGCTAATCCGGACATTAAGGTGCTTATCACAGATT
GGAACATGCCTGAAATGAACGGCTTGGATCTCGTTATAAAGGTGCGTGCGGATGAGCGGTTTAAAGAAATCCCTATTATC
ATGATCACCACAGAGGGCGGTAAGGCTGAGGTCATTACGGCTTTGAAAGCGGGCGTGAATAACTATATTGTGAAGCCTTT
TACCCCCCAGGTTTTGAAAGAAAAATTAGAGGTTGTTTTAGGGACAAACGATTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  chpA Acinetobacter baumannii strain A118

37.815

95.968

0.363

Multiple sequence alignment