Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   H7X73_RS20750 Genome accession   NZ_AP022013
Coordinates   4393870..4395309 (-) Length   479 a.a.
NCBI ID   WP_039040474.1    Uniprot ID   -
Organism   Aeromonas caviae strain WP3-S18-ESBL-02     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4388870..4400309
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7X73_RS20720 (WP3S18E02_39920) dagF 4389151..4389891 (+) 741 WP_183149005.1 2-dehydro-3-deoxy-phosphogluconate aldolase -
  H7X73_RS20725 (WP3S18E02_39930) - 4389993..4391897 (+) 1905 WP_183149006.1 BglG family transcription antiterminator -
  H7X73_RS20730 (WP3S18E02_39940) npr 4391913..4392185 (-) 273 WP_010675868.1 PTS phosphocarrier protein NPr -
  H7X73_RS20735 (WP3S18E02_39950) rapZ 4392206..4393072 (-) 867 WP_010675869.1 RNase adapter RapZ -
  H7X73_RS20740 (WP3S18E02_39960) ptsN 4393113..4393559 (-) 447 WP_010675870.1 PTS IIA-like nitrogen regulatory protein PtsN -
  H7X73_RS20745 (WP3S18E02_39970) hpf 4393562..4393849 (-) 288 WP_005305957.1 ribosome hibernation promoting factor -
  H7X73_RS20750 (WP3S18E02_39980) rpoN/rpoN1 4393870..4395309 (-) 1440 WP_039040474.1 RNA polymerase factor sigma-54 Machinery gene
  H7X73_RS20755 (WP3S18E02_39990) lptB 4395375..4396100 (-) 726 WP_010675872.1 LPS export ABC transporter ATP-binding protein -
  H7X73_RS20760 (WP3S18E02_40000) lptA 4396113..4396631 (-) 519 WP_010675873.1 lipopolysaccharide transport periplasmic protein LptA -
  H7X73_RS20765 (WP3S18E02_40010) lptC 4396618..4397178 (-) 561 WP_039040473.1 LPS export ABC transporter periplasmic protein LptC -
  H7X73_RS20770 (WP3S18E02_40020) kdsC 4397175..4397729 (-) 555 WP_048208602.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  H7X73_RS20775 (WP3S18E02_40030) - 4397729..4398724 (-) 996 WP_042880205.1 KpsF/GutQ family sugar-phosphate isomerase -
  H7X73_RS20780 (WP3S18E02_40040) mlaF 4398931..4399731 (+) 801 WP_029314846.1 phospholipid ABC transporter ATP-binding protein MlaF -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 53761.57 Da        Isoelectric Point: 4.3728

>NTDB_id=76229 H7X73_RS20750 WP_039040474.1 4393870..4395309(-) (rpoN/rpoN1) [Aeromonas caviae strain WP3-S18-ESBL-02]
MKPTLQLRLGQSLTMTPQLQQAIRLLQLSTLELQQEIQQALDNNPLLEQEENEAQETSQTETQDASQLDSSDAMAQESMP
DELPVDTTWDEVYSAGTAQSAGPIHDGEDSVYQGETTENLQDYLLWQMRLTPFSDVDAAIALAIIDAIDESGYLTATLED
IQAAVSSEEVEVELDEIEAVLKRVQHFDPVGIAARSVQECLLIQLGQYSPDLPWLDEAREVIREHMDLLGNRDYRTLARK
TRLKESDLKEVLDLIQQLEPRPGNGIIQSESQYVIPDVSVVKKGSKWVVELNPDSAPRIRVNEAYAAMARNARSSTDTQF
IRSHLQEAKWFIKSLESRNDTLLKVASCIVEQQQGFFEYGEEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPRGIFE
LKFFFSSHVNTEGGGECSSTAIRALIKKLVTAENPAKPLSDSKIADLLAEQGIMVARRTIAKYRESLLIPPSNQRKRLV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=76229 H7X73_RS20750 WP_039040474.1 4393870..4395309(-) (rpoN/rpoN1) [Aeromonas caviae strain WP3-S18-ESBL-02]
ATGAAGCCGACATTACAGTTGCGTCTCGGTCAGTCCCTGACCATGACGCCACAATTACAACAAGCGATTCGTCTGCTCCA
GCTCTCCACCCTGGAACTCCAGCAGGAAATTCAGCAAGCGCTCGACAACAACCCCTTGCTGGAGCAAGAGGAGAACGAGG
CGCAGGAAACCAGTCAGACAGAGACACAGGACGCCAGTCAACTCGACTCCAGCGACGCCATGGCCCAGGAGAGCATGCCG
GATGAACTGCCGGTGGACACCACCTGGGACGAGGTCTACTCGGCCGGTACGGCCCAGAGCGCAGGCCCCATCCATGACGG
GGAAGACAGCGTCTATCAGGGGGAGACCACCGAGAACCTGCAGGACTACCTGCTGTGGCAGATGCGGCTCACCCCGTTCA
GTGATGTGGATGCTGCCATCGCCCTTGCCATCATCGATGCCATCGACGAATCCGGGTATCTGACTGCCACCCTCGAGGAT
ATTCAGGCTGCAGTCAGCAGCGAGGAGGTAGAAGTCGAACTGGATGAGATCGAAGCCGTGCTCAAGCGGGTGCAGCATTT
CGATCCGGTCGGCATCGCCGCCCGTTCGGTGCAAGAGTGTCTGCTGATCCAGCTCGGCCAGTATTCGCCGGACCTGCCCT
GGCTCGACGAAGCCAGAGAGGTGATCCGCGAACACATGGACCTGCTCGGCAATCGCGACTACCGCACCCTGGCTCGCAAG
ACCCGCCTCAAGGAGAGCGATCTCAAGGAGGTCCTGGATCTCATCCAGCAACTGGAGCCCAGACCCGGCAACGGCATCAT
CCAGAGTGAATCCCAGTACGTGATCCCGGATGTGTCCGTGGTCAAGAAGGGCAGCAAGTGGGTGGTTGAACTCAATCCGG
ACTCTGCTCCGCGCATCCGTGTCAACGAGGCCTATGCGGCCATGGCACGCAATGCTCGCAGCAGCACGGATACCCAGTTC
ATCCGTTCCCATTTGCAGGAGGCCAAGTGGTTCATCAAGAGCCTGGAGAGTCGTAACGACACCCTGCTCAAGGTGGCCAG
CTGCATCGTCGAGCAGCAGCAGGGCTTTTTCGAGTACGGCGAAGAGGCCATGAAACCCATGGTACTCAACGACATCGCCG
AAGCGGTGGAGATGCATGAGTCGACCATTTCACGGGTCACGACCCAGAAGTACATGCATACGCCCCGCGGCATTTTTGAA
CTGAAGTTTTTTTTCTCCAGTCACGTCAATACGGAAGGAGGAGGAGAGTGCTCATCGACCGCTATTCGCGCCCTGATCAA
GAAGCTGGTGACGGCGGAAAACCCCGCCAAGCCGCTTAGTGATAGCAAGATCGCGGATTTGCTGGCCGAACAGGGTATTA
TGGTGGCGAGACGCACGATCGCAAAGTACCGTGAATCCTTGTTGATCCCGCCATCCAATCAGCGCAAACGCCTGGTTTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(319-477)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.472

100

0.482

Multiple sequence alignment