Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   QL281_RS04465 Genome accession   NZ_CP125292
Coordinates   791070..792074 (-) Length   334 a.a.
NCBI ID   WP_017696349.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM117797     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 786070..797074
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QL281_RS04435 (QL281_04435) yrbG 786888..787544 (-) 657 WP_017696351.1 DUF421 domain-containing protein -
  QL281_RS04440 (QL281_04440) - 787742..788131 (+) 390 WP_029727131.1 TIGR04086 family membrane protein -
  QL281_RS04445 (QL281_04445) yajC 788343..788609 (-) 267 WP_004398708.1 preprotein translocase subunit YajC -
  QL281_RS04450 (QL281_04450) tgt 788647..789792 (-) 1146 WP_003229725.1 tRNA guanosine(34) transglycosylase Tgt -
  QL281_RS04455 (QL281_04455) queA 789819..790847 (-) 1029 WP_014477530.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  QL281_RS04460 (QL281_04460) yrzS 790877..791077 (-) 201 WP_003222669.1 DUF2905 domain-containing protein -
  QL281_RS04465 (QL281_04465) ruvB 791070..792074 (-) 1005 WP_017696349.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  QL281_RS04470 (QL281_04470) ruvA 792085..792690 (-) 606 WP_144458755.1 Holliday junction branch migration protein RuvA Machinery gene
  QL281_RS04475 (QL281_04475) bofC 792829..793341 (-) 513 WP_003229715.1 sporulation cell-cell signaling protein BofC -
  QL281_RS04480 (QL281_04480) csbX 793389..794696 (-) 1308 WP_003246197.1 MFS transporter -
  QL281_RS04485 (QL281_04485) iolG 794767..795792 (-) 1026 WP_004398990.1 inositol 2-dehydrogenase -
  QL281_RS04490 (QL281_04490) yrzF 796030..796677 (+) 648 WP_003246159.1 phosphotransferase -
  QL281_RS04495 (QL281_04495) - 796723..796845 (-) 123 WP_003229707.1 hypothetical protein -
  QL281_RS04500 (QL281_04500) - 796930..797004 (+) 75 Protein_894 hypothetical protein -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 37483.78 Da        Isoelectric Point: 5.1631

>NTDB_id=762229 QL281_RS04465 WP_017696349.1 791070..792074(-) (ruvB) [Bacillus subtilis strain SRCM117797]
MDERLVSSEADNHESVIEQSLRPQNLSQYIGQHKVKENLRVFIDAAKMRQETLDHVLLYGPPGLGKTTLASIVANEMGVE
LRTTSGPAIERPGDLAAILTALEPGDVLFIDEIHRLHRSIEEVLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATT
RVGLLTAPLRDRFGVMSRLEYYTQEELADIVTRTADVFEVEIDKPSALEIARRSRGTPRVANRLLRRVRDFAQVLGDSRI
TEDISQNALERLQVDRLGLDHIDHKLLMGMIEKFNGGPVGLDTISATIGEESHTIEDVYEPYLLQIGFIQRTPRGRIVTP
AVYHHFQMEAPRYD

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=762229 QL281_RS04465 WP_017696349.1 791070..792074(-) (ruvB) [Bacillus subtilis strain SRCM117797]
ATGGATGAACGGCTCGTCTCAAGTGAAGCAGACAACCATGAATCAGTGATAGAGCAAAGCCTGAGGCCGCAAAATCTGTC
ACAGTATATCGGGCAGCATAAGGTAAAAGAAAATTTGCGCGTGTTTATAGATGCGGCGAAAATGAGACAGGAGACGCTGG
ATCATGTTCTTCTGTACGGGCCGCCCGGACTCGGAAAAACTACGCTTGCTTCGATTGTTGCCAATGAAATGGGAGTGGAG
CTGCGGACGACATCAGGGCCTGCGATTGAAAGGCCTGGTGATTTGGCTGCTATATTAACGGCGCTGGAACCGGGAGATGT
ATTATTTATTGATGAAATACATAGGTTGCACAGATCGATCGAAGAGGTGCTTTATCCTGCAATGGAAGACTTTTGCCTGG
ACATTGTGATTGGCAAAGGCCCATCTGCCCGCTCGGTTCGGCTCGACCTTCCGCCTTTTACGCTGGTGGGAGCCACGACA
AGGGTGGGGCTTTTGACGGCTCCTTTAAGAGACAGATTCGGCGTCATGTCTCGCCTTGAGTACTATACACAAGAAGAACT
GGCGGATATTGTCACAAGAACCGCTGATGTATTCGAGGTTGAGATTGATAAACCGTCGGCTCTTGAAATTGCAAGAAGAT
CGAGAGGGACGCCCCGCGTGGCGAACCGCCTGCTGAGAAGGGTGCGTGATTTCGCCCAAGTGCTGGGTGACAGCAGGATC
ACTGAAGACATTTCTCAGAATGCGCTGGAGCGGCTTCAGGTTGATCGCCTCGGTTTGGATCATATTGATCATAAGCTGCT
GATGGGCATGATCGAAAAATTCAACGGCGGCCCAGTAGGCCTTGATACGATATCAGCTACGATCGGCGAGGAATCGCATA
CGATTGAAGACGTATATGAACCATATCTGCTGCAAATTGGATTTATACAAAGAACGCCGCGTGGAAGGATCGTGACACCG
GCCGTTTATCATCATTTCCAAATGGAGGCTCCCCGATATGACTGA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(21-179)

RuvB AAA lid domain (AAA_lid_4)

(182-255)

RuvB C-terminal winged helix domain (WHD_RuvB)

(257-326)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

99.701

100

0.997
  ruvB Streptococcus pneumoniae R6

60.429

97.605

0.59
  ruvB Streptococcus pneumoniae D39

60.429

97.605

0.59
  ruvB Streptococcus pneumoniae TIGR4

60.429

97.605

0.59
  ruvB Synechocystis sp. PCC 6803

56.839

98.503

0.56
  ruvB Helicobacter pylori 26695

52.744

98.204

0.518