Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   OXA86_RS04870 Genome accession   NZ_CP113439
Coordinates   1064468..1066564 (+) Length   698 a.a.
NCBI ID   WP_044497174.1    Uniprot ID   -
Organism   Legionella pneumophila strain PATHC002     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1059468..1071564
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OXA86_RS04845 (OXA86_04845) ravI 1060230..1061237 (-) 1008 WP_014841275.1 Dot/Icm T4SS effector RavI -
  OXA86_RS04850 (OXA86_04850) pilM 1061654..1062718 (+) 1065 WP_014841276.1 type IV pilus assembly protein PilM Machinery gene
  OXA86_RS04855 (OXA86_04855) pilN 1062722..1063270 (+) 549 WP_010946663.1 PilN domain-containing protein Machinery gene
  OXA86_RS04860 (OXA86_04860) pilO 1063284..1063883 (+) 600 WP_014841277.1 type 4a pilus biogenesis protein PilO Machinery gene
  OXA86_RS04865 (OXA86_04865) pilP 1063880..1064464 (+) 585 WP_014841278.1 pilus assembly protein PilP Machinery gene
  OXA86_RS04870 (OXA86_04870) pilQ 1064468..1066564 (+) 2097 WP_044497174.1 type IV pilus secretin PilQ Machinery gene
  OXA86_RS04875 (OXA86_04875) aroK 1067009..1067536 (+) 528 WP_010946667.1 shikimate kinase AroK -
  OXA86_RS04880 (OXA86_04880) aroB 1067523..1068632 (+) 1110 WP_014841280.1 3-dehydroquinate synthase -
  OXA86_RS04885 (OXA86_04885) - 1068629..1070080 (+) 1452 WP_044497171.1 SPOR domain-containing protein -
  OXA86_RS04890 (OXA86_04890) - 1070189..1070620 (+) 432 WP_010946670.1 universal stress protein -

Sequence

Protein


Download         Length: 698 a.a.        Molecular weight: 77441.71 Da        Isoelectric Point: 9.5345

>NTDB_id=762231 OXA86_RS04870 WP_044497174.1 1064468..1066564(+) (pilQ) [Legionella pneumophila strain PATHC002]
MRKIIAVLILISASLSLAYSKDNSLISVKVLPLPENRVRIDFQFSKPLKQLPASFITQKPPRLVLDFISTDMQIPSDQKT
KTIQLGSLHSYNIVAVGDRVRAILELDRSVSYSGSTAGSVYSLVLNGKSNDLFENSKEVFITNQVVNAKHEIKRIDFRGI
EKQGGRVLIDVSDTGIPIDVTQVGKEIVVNFLNTKIPLNLMKRYDVSDFHSPVQIITMQQEGKKVRMTILSKGDYGHFVY
QVNKQFMVDVFPLTAEEIRQAKLKKQVFTGKRISLNFQNISIRAVLQLLADFTGINMVVSDKVQGDITLRLNDIPWDQAL
DIILTTQGLDKRRKGNVMLIDTKASMDKMEEEQLKSQQTIEKLEPIRSDLIQINYAKAADIAVLIKDKQNSLLSDRGKIS
VDARTNTIWIQDTGTKIEEVRELIKQLDIPVKQVLIEARIVEVTKDFSQDIGIRWGVSRPTHLSGTLEGANELARGTAPA
NVVPLERRLNLDLAAAPLTGATPASVGIALAKLNDNILLDLELSALESEGRAELISSPRLITTNQQAAVIESGEEIPYQE
ATSSGATAVAFKKAVLSLKVTPQITPDGKILMDLQINQDTPSPQTFLGVPAIITKEIQTNVLVNNGQTIVLGGIYKQDKN
KVINRIPFFGELPVVGILFSNRQITLKNEELLIFITPRIITNALSITTIEGREKDVYK

Nucleotide


Download         Length: 2097 bp        

>NTDB_id=762231 OXA86_RS04870 WP_044497174.1 1064468..1066564(+) (pilQ) [Legionella pneumophila strain PATHC002]
GTGAGAAAAATTATCGCGGTTTTGATATTAATTAGTGCCAGTTTGAGTCTGGCATATTCTAAAGATAATTCGCTCATTTC
AGTAAAAGTATTGCCATTGCCCGAAAACAGAGTGCGCATTGATTTTCAATTTTCCAAACCCTTAAAGCAGTTGCCTGCAA
GCTTTATTACTCAAAAGCCCCCACGTTTGGTGTTAGATTTTATCAGCACTGATATGCAAATTCCTTCAGATCAGAAAACT
AAAACCATTCAATTAGGCTCATTACACAGTTATAACATTGTTGCTGTTGGAGATAGAGTAAGAGCCATATTGGAACTGGA
TCGTTCAGTGTCCTATTCTGGCAGTACGGCGGGTTCTGTTTATAGCCTTGTCCTGAATGGTAAAAGCAATGATTTATTTG
AAAATAGCAAGGAGGTATTCATAACGAACCAGGTTGTGAACGCCAAGCATGAAATTAAAAGAATTGATTTTCGTGGTATA
GAAAAGCAGGGCGGTAGAGTTTTAATTGATGTTTCTGATACTGGTATTCCAATTGATGTAACTCAAGTTGGGAAAGAAAT
AGTCGTTAATTTCCTGAATACCAAGATCCCTTTGAATTTAATGAAACGGTATGATGTTTCTGATTTTCACAGCCCTGTGC
AGATTATTACGATGCAACAGGAAGGCAAGAAGGTTCGCATGACCATCCTCAGTAAAGGGGATTATGGACATTTTGTGTAT
CAGGTCAATAAACAATTTATGGTCGATGTCTTTCCTTTAACTGCGGAAGAAATTCGTCAGGCGAAATTGAAGAAACAGGT
ATTTACTGGTAAACGTATTTCTTTGAATTTCCAGAATATTAGTATTCGGGCTGTACTTCAATTGCTGGCAGATTTTACCG
GAATCAATATGGTTGTCAGCGACAAAGTACAAGGAGATATTACGCTTAGATTAAATGATATTCCCTGGGATCAGGCTCTG
GATATCATTTTAACCACACAAGGGTTAGATAAGCGTAGAAAGGGCAACGTCATGTTGATAGATACCAAGGCCTCCATGGA
TAAAATGGAGGAAGAACAACTCAAAAGTCAACAGACAATTGAAAAACTTGAACCTATCCGTTCTGATTTAATACAGATTA
ATTATGCAAAGGCAGCAGATATTGCTGTTTTAATCAAGGATAAGCAAAATTCCCTATTATCAGACAGAGGAAAAATAAGT
GTTGATGCCAGAACGAATACAATCTGGATTCAGGATACTGGCACCAAAATTGAGGAAGTAAGGGAACTGATAAAGCAATT
GGATATCCCCGTTAAGCAAGTGCTTATTGAGGCAAGAATTGTTGAAGTAACTAAAGATTTTAGCCAGGATATTGGGATAC
GCTGGGGGGTATCAAGACCAACTCACTTAAGTGGTACACTGGAAGGTGCTAACGAGTTAGCGAGAGGCACAGCACCAGCC
AATGTTGTCCCCTTGGAAAGAAGATTAAATCTTGATTTGGCAGCTGCTCCTTTAACTGGAGCTACACCGGCCTCGGTAGG
TATTGCGCTAGCTAAACTTAATGATAACATTCTGCTTGATCTGGAATTGTCTGCTTTGGAAAGCGAAGGGCGTGCTGAAT
TAATATCCAGTCCTCGCCTGATTACTACGAATCAACAGGCAGCAGTCATAGAGTCTGGTGAGGAGATTCCCTATCAGGAG
GCAACATCAAGTGGAGCGACTGCTGTCGCATTTAAAAAAGCGGTATTGAGTTTGAAAGTTACCCCGCAAATTACGCCTGA
TGGTAAAATTTTGATGGATTTACAGATAAATCAGGATACTCCTTCCCCACAAACATTCCTTGGTGTTCCAGCAATAATAA
CAAAGGAGATTCAGACGAATGTTCTGGTTAATAATGGACAAACCATAGTACTTGGGGGTATTTATAAGCAAGATAAAAAC
AAGGTAATCAATAGAATTCCTTTCTTTGGTGAGTTGCCTGTTGTCGGTATTTTATTTAGTAATAGACAAATCACATTGAA
AAATGAAGAATTACTTATCTTTATTACACCAAGAATAATAACGAATGCCTTATCGATTACAACGATAGAGGGACGCGAGA
AAGATGTTTATAAATAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(370-433)

Bacterial type II and III secretion system protein (Secretin)

(525-680)

AMIN domain (AMIN)

(39-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Legionella pneumophila strain ERS1305867

99.713

100

0.997
  pilQ Legionella pneumophila strain Lp02

99.57

100

0.996
  pilQ Pseudomonas aeruginosa PAK

37.872

100

0.383
  comQ Acinetobacter baylyi ADP1

38.574

98.424

0.38