Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   OXA86_RS04850 Genome accession   NZ_CP113439
Coordinates   1061654..1062718 (+) Length   354 a.a.
NCBI ID   WP_014841276.1    Uniprot ID   A0AAV2UWB6
Organism   Legionella pneumophila strain PATHC002     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1056654..1067718
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OXA86_RS04840 (OXA86_04840) - 1057694..1060078 (-) 2385 WP_014841274.1 penicillin-binding protein 1A -
  OXA86_RS04845 (OXA86_04845) ravI 1060230..1061237 (-) 1008 WP_014841275.1 Dot/Icm T4SS effector RavI -
  OXA86_RS04850 (OXA86_04850) pilM 1061654..1062718 (+) 1065 WP_014841276.1 type IV pilus assembly protein PilM Machinery gene
  OXA86_RS04855 (OXA86_04855) pilN 1062722..1063270 (+) 549 WP_010946663.1 PilN domain-containing protein Machinery gene
  OXA86_RS04860 (OXA86_04860) pilO 1063284..1063883 (+) 600 WP_014841277.1 type 4a pilus biogenesis protein PilO Machinery gene
  OXA86_RS04865 (OXA86_04865) pilP 1063880..1064464 (+) 585 WP_014841278.1 pilus assembly protein PilP Machinery gene
  OXA86_RS04870 (OXA86_04870) pilQ 1064468..1066564 (+) 2097 WP_044497174.1 type IV pilus secretin PilQ Machinery gene
  OXA86_RS04875 (OXA86_04875) aroK 1067009..1067536 (+) 528 WP_010946667.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38727.73 Da        Isoelectric Point: 4.9540

>NTDB_id=762227 OXA86_RS04850 WP_014841276.1 1061654..1062718(+) (pilM) [Legionella pneumophila strain PATHC002]
MLKLLKPKHRSILGIDISSSAVKILEISGSGEDICVEGYGREEIPASALEGNIIKDVDVVANCIKKLVERLKFTSKNVAL
AVPDSAVISKVVQINEGLTDLEMEELVVIEADKYIPYPIDEINLDFEVLGHSAKSASLLDVLIVASRAENVNTRVEAAHR
AGLEPKVVDVESYAVERSVQQIAQELPASGQDKIVAIVDIGANYTHLFVLHGMRLIFSREEKFGGMQLVEAIAEHYHMNL
EEAIALKNQGKLPEDYESAVLEPFKDMILLQIKRTLQFFYSTSQHGFVDHILLAGGMARQPGLAALIQEQLGVTTTVANP
LSHMSFGKKVNLDVINSDAPTLMVACGLALRHVE

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=762227 OXA86_RS04850 WP_014841276.1 1061654..1062718(+) (pilM) [Legionella pneumophila strain PATHC002]
GTGCTCAAATTGCTTAAACCTAAGCATCGTTCAATTCTTGGCATTGACATCAGTTCTTCCGCAGTGAAAATTCTGGAAAT
ATCAGGTTCCGGAGAGGACATTTGTGTTGAAGGATATGGTCGTGAAGAAATACCTGCCTCTGCCCTAGAAGGAAATATAA
TCAAGGATGTCGATGTAGTAGCGAATTGTATCAAAAAATTAGTAGAAAGATTGAAGTTTACTTCTAAAAATGTGGCATTG
GCTGTACCTGATTCGGCTGTTATCAGTAAAGTAGTGCAAATTAATGAAGGGTTAACTGACCTTGAAATGGAAGAGCTTGT
CGTTATTGAAGCGGATAAGTACATTCCTTACCCAATAGATGAAATAAACCTGGATTTTGAAGTGTTAGGCCATTCAGCCA
AGAGCGCATCACTGCTTGATGTTTTAATCGTGGCATCAAGGGCAGAAAACGTTAATACCCGTGTTGAAGCAGCCCATAGA
GCAGGGCTGGAACCCAAAGTTGTTGACGTTGAGTCTTATGCAGTAGAGCGTTCAGTACAACAAATTGCGCAAGAATTACC
GGCAAGTGGACAAGACAAAATTGTTGCAATAGTAGATATTGGAGCCAATTATACTCACTTATTTGTTTTGCATGGTATGC
GACTAATCTTTTCAAGAGAAGAAAAATTTGGAGGTATGCAGCTTGTTGAAGCTATTGCAGAACACTATCATATGAATTTG
GAGGAGGCTATTGCCCTAAAAAATCAGGGTAAGTTACCAGAGGACTATGAATCCGCTGTATTAGAACCTTTTAAGGACAT
GATTCTTTTGCAGATCAAACGTACTTTGCAGTTTTTTTATTCAACCAGTCAACATGGATTTGTAGACCATATTTTATTGG
CGGGAGGAATGGCAAGGCAACCAGGATTGGCAGCGCTTATTCAAGAACAGTTAGGAGTGACTACTACAGTGGCAAATCCA
CTATCCCATATGTCTTTTGGTAAAAAAGTGAATTTGGATGTGATTAACAGTGATGCGCCTACACTGATGGTGGCATGTGG
GTTGGCTTTGAGGCATGTCGAGTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-352)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Legionella pneumophila strain ERS1305867

99.153

100

0.992
  comM Acinetobacter nosocomialis M2

43.38

100

0.435
  pilM Acinetobacter baumannii D1279779

43.099

100

0.432
  comM Acinetobacter baylyi ADP1

41.737

100

0.421