Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   OXA87_RS13555 Genome accession   NZ_CP113435
Coordinates   3066062..3066721 (-) Length   219 a.a.
NCBI ID   WP_011947563.1    Uniprot ID   -
Organism   Legionella pneumophila strain PATHC025     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3061062..3071721
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OXA87_RS13540 (OXA87_13540) - 3062006..3062665 (+) 660 WP_011947560.1 hypothetical protein -
  OXA87_RS13545 (OXA87_13545) lcl 3062833..3064170 (+) 1338 WP_040184835.1 collagen-like adhesin Lcl -
  OXA87_RS13550 (OXA87_13550) uvrC 3064194..3066050 (-) 1857 WP_027219999.1 excinuclease ABC subunit UvrC -
  OXA87_RS13555 (OXA87_13555) letA 3066062..3066721 (-) 660 WP_011947563.1 two-component system response regulator LetA Regulator
  OXA87_RS13560 (OXA87_13560) phhA 3066846..3067664 (-) 819 WP_011947564.1 phenylalanine 4-monooxygenase -
  OXA87_RS13565 (OXA87_13565) - 3068104..3069201 (+) 1098 WP_027223999.1 competence/damage-inducible protein A -
  OXA87_RS13570 (OXA87_13570) cgtA 3069160..3070185 (-) 1026 WP_027223998.1 Obg family GTPase CgtA -
  OXA87_RS13575 (OXA87_13575) rpmA 3070400..3070678 (-) 279 WP_010948350.1 50S ribosomal protein L27 -
  OXA87_RS13580 (OXA87_13580) rplU 3070691..3071002 (-) 312 WP_010948351.1 50S ribosomal protein L21 -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 24566.53 Da        Isoelectric Point: 5.1572

>NTDB_id=762088 OXA87_RS13555 WP_011947563.1 3066062..3066721(-) (letA) [Legionella pneumophila strain PATHC025]
MIKVLIVDDHALVRMGIRRLLEDMSDVDVVADAESGEQALAYVKTHSPDVVLLDMKMPGIDGWEVTRRLKKTNPNIKVIA
VTAICSDPLPTRVLQLGAMGYLTKESGAEEMAAAIRKVAKGEKYLSAEIAQKMAINSLQEPQDSPFDLLSEREMQVMLMI
TSGMNVQDIADRLFLSSKTINGYRYRMFEKLGIKNDVELTYLAMKHRIIEHPNDLSQDD

Nucleotide


Download         Length: 660 bp        

>NTDB_id=762088 OXA87_RS13555 WP_011947563.1 3066062..3066721(-) (letA) [Legionella pneumophila strain PATHC025]
TTGATTAAAGTATTAATTGTTGATGACCATGCATTGGTTAGAATGGGCATTCGACGATTGCTTGAAGATATGTCGGATGT
TGATGTGGTTGCAGATGCTGAAAGTGGTGAGCAGGCTTTAGCTTATGTGAAAACCCACTCCCCTGATGTCGTATTATTAG
ACATGAAAATGCCTGGGATAGATGGGTGGGAAGTGACGCGTCGCTTAAAAAAAACAAACCCAAATATTAAAGTCATAGCC
GTTACAGCTATTTGCTCAGATCCTCTCCCTACTCGAGTATTGCAATTAGGTGCTATGGGATACCTTACTAAAGAATCAGG
GGCTGAAGAAATGGCTGCTGCAATTCGTAAAGTGGCTAAAGGTGAGAAATATCTTAGTGCCGAGATTGCACAAAAAATGG
CAATTAATAGTCTTCAGGAGCCTCAGGATTCCCCCTTTGATTTATTGTCTGAAAGAGAAATGCAAGTCATGTTGATGATT
ACGAGCGGCATGAATGTACAAGACATTGCTGATAGATTGTTTTTAAGTAGTAAAACCATCAATGGTTATCGATATAGGAT
GTTTGAAAAATTGGGGATTAAAAATGATGTGGAGCTTACTTATTTGGCTATGAAGCACCGCATTATTGAACACCCCAATG
ATTTGTCACAAGATGATTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(148-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

100

100

1
  letA Legionella pneumophila strain ERS1305867

100

100

1