Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OU819_RS10670 Genome accession   NZ_CP113428
Coordinates   2067923..2068132 (+) Length   69 a.a.
NCBI ID   WP_267999239.1    Uniprot ID   -
Organism   Bacillus cereus strain NW6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2062923..2073132
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OU819_RS10660 (OU819_10660) - 2063566..2066487 (-) 2922 WP_267999158.1 helix-turn-helix domain-containing protein -
  OU819_RS10665 (OU819_10665) - 2066520..2067746 (-) 1227 WP_267999159.1 hypothetical protein -
  OU819_RS10670 (OU819_10670) ssb 2067923..2068132 (+) 210 WP_267999239.1 single-stranded DNA-binding protein Machinery gene
  OU819_RS10675 (OU819_10675) - 2068158..2068748 (-) 591 WP_088015767.1 TetR/AcrR family transcriptional regulator -
  OU819_RS10680 (OU819_10680) - 2068865..2069998 (-) 1134 WP_001066853.1 FAD-dependent oxidoreductase -
  OU819_RS10685 (OU819_10685) - 2070257..2071384 (+) 1128 WP_000692577.1 conserved virulence factor C family protein -
  OU819_RS10690 (OU819_10690) - 2071388..2071771 (+) 384 WP_000634868.1 thiol-disulfide oxidoreductase DCC family protein -
  OU819_RS10695 (OU819_10695) - 2071855..2072289 (+) 435 WP_000063712.1 BrxA/BrxB family bacilliredoxin -
  OU819_RS10700 (OU819_10700) - 2072339..2073115 (+) 777 WP_000637470.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 69 a.a.        Molecular weight: 8188.29 Da        Isoelectric Point: 9.4585

>NTDB_id=761906 OU819_RS10670 WP_267999239.1 2067923..2068132(+) (ssb) [Bacillus cereus strain NW6]
MSTYLWRYVVWRKSAENVTEYCKKGSLVGITGRIHTRNYEDDQGKRIYITEVVIESITFLERRREGASQ

Nucleotide


Download         Length: 210 bp        

>NTDB_id=761906 OU819_RS10670 WP_267999239.1 2067923..2068132(+) (ssb) [Bacillus cereus strain NW6]
ATAAGTACATATTTATGGAGATATGTCGTATGGCGAAAATCGGCTGAGAATGTAACTGAATATTGTAAGAAAGGGTCTCT
TGTTGGAATTACCGGACGTATTCATACGAGGAATTACGAGGATGATCAAGGGAAGAGAATATATATAACGGAAGTCGTGA
TTGAGAGCATTACATTTTTGGAGAGAAGGCGCGAAGGTGCATCGCAATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(7-60)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

54.412

98.551

0.536
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.364

79.71

0.449
  ssbB Bacillus subtilis subsp. subtilis str. 168

49.18

88.406

0.435
  ssbB Streptococcus sobrinus strain NIDR 6715-7

45.763

85.507

0.391
  ssbB Lactococcus lactis subsp. cremoris KW2

47.273

79.71

0.377