Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   OT793_RS14925 Genome accession   NZ_CP113285
Coordinates   3115733..3115885 (+) Length   50 a.a.
NCBI ID   WP_395755668.1    Uniprot ID   -
Organism   Edwardsiella ictaluri strain 12-TAL-295-K     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3110733..3120885
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OT793_RS14905 (OT793_14840) - 3110955..3113408 (-) 2454 WP_395755664.1 fimbrial biogenesis outer membrane usher protein -
  OT793_RS14910 (OT793_14845) - 3113429..3114121 (-) 693 WP_395755665.1 molecular chaperone -
  OT793_RS14915 (OT793_14850) - 3114172..3114567 (-) 396 WP_395755666.1 fimbrial protein -
  OT793_RS14920 (OT793_14855) - 3115262..3115684 (+) 423 WP_395755667.1 hypothetical protein -
  OT793_RS14925 (OT793_14860) qstR 3115733..3115885 (+) 153 WP_395755668.1 LuxR C-terminal-related transcriptional regulator Regulator
  OT793_RS14930 (OT793_14865) - 3115988..3116797 (+) 810 WP_395755669.1 N-acetylmuramoyl-L-alanine amidase -
  OT793_RS14935 (OT793_14870) - 3116802..3117812 (-) 1011 Protein_2860 NAD-dependent epimerase/dehydratase family protein -
  OT793_RS14940 (OT793_14875) - 3118202..3119449 (-) 1248 WP_241772399.1 multidrug effflux MFS transporter -
  OT793_RS14945 (OT793_14880) - 3119473..3119907 (-) 435 WP_049640517.1 lipocalin-like domain-containing protein -

Sequence

Protein


Download         Length: 50 a.a.        Molecular weight: 5745.71 Da        Isoelectric Point: 10.5694

>NTDB_id=761638 OT793_RS14925 WP_395755668.1 3115733..3115885(+) (qstR) [Edwardsiella ictaluri strain 12-TAL-295-K]
MQQGASNLDISRILYISKNTVRTHVYNIFKKISVKNRIQAVIWADTHLCG

Nucleotide


Download         Length: 153 bp        

>NTDB_id=761638 OT793_RS14925 WP_395755668.1 3115733..3115885(+) (qstR) [Edwardsiella ictaluri strain 12-TAL-295-K]
ATGCAGCAGGGGGCCAGTAATCTGGATATCTCGCGCATCCTGTATATCAGTAAAAATACGGTAAGAACGCATGTATATAA
TATTTTTAAGAAAATATCAGTGAAAAATCGGATCCAGGCGGTGATATGGGCCGATACTCACCTGTGTGGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(2-44)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio parahaemolyticus RIMD 2210633

52.083

96

0.5
  qstR Vibrio campbellii strain DS40M4

52.083

96

0.5
  qstR Vibrio cholerae strain A1552

50

96

0.48
  vraR Staphylococcus aureus N315

44.681

94

0.42
  degU Bacillus subtilis subsp. subtilis str. 168

45.455

88

0.4