Detailed information NTG0761332

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: OUY36_RS03190
• Genome accession: NZ_CP113258
• Coordinates: 707528..708592 (+)
• Length: 354 a.a.
• NCBI ID: WP_161611797.1
• Uniprot ID: -
• Organism: Stutzerimonas sp. R40042
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	707528..715744	707528..708592	within	0

Gene organization within MGE regions

Location: 707528..715744

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OUY36_RS03190 (OUY36_03190)	comM	707528..708592 (+)	1065	WP_161611797.1	pilus assembly protein PilM	Machinery gene
OUY36_RS03195 (OUY36_03195)	-	708592..709164 (+)	573	WP_063539613.1	PilN domain-containing protein	-
OUY36_RS03200 (OUY36_03200)	pilO	709161..709784 (+)	624	WP_110778197.1	type 4a pilus biogenesis protein PilO	-
OUY36_RS03205 (OUY36_03205)	pilP	709781..710308 (+)	528	WP_156245535.1	type 4a pilus biogenesis lipoprotein PilP	-
OUY36_RS03210 (OUY36_03210)	pilQ	710362..712479 (+)	2118	WP_156245536.1	type IV pilus secretin PilQ	Machinery gene
OUY36_RS03215 (OUY36_03215)	aroK	712485..713030 (+)	546	WP_161611796.1	shikimate kinase AroK	-
OUY36_RS03220 (OUY36_03220)	aroB	713053..714156 (+)	1104	WP_161611795.1	3-dehydroquinate synthase	-
OUY36_RS03225 (OUY36_03225)	-	714167..715744 (+)	1578	WP_267936746.1	AAA family ATPase	-

Sequence

Protein

• Length: 354 a.a.
• Molecular weight: 37754.15 Da
• Isoelectric Point: 4.6346

>NTDB_id=761332 OUY36_RS03190 WP_161611797.1 707528..708592(+) (comM) [Stutzerimonas sp. R40042]
MLGLFTKKANTLLGIDISSTSVKLLELSRSGNRYRVEAYAVEPLPPNAVVEKNIAELEGVGQALQRVVAKAKTGCKSAVV
AVSGSAVITKTIEMDAGLSDEELENQLKIEADQYIPYPLEEVAIDFEVQGPAPRAPGRVEVLLAACRKENVEVREAALAL
AGLSAKVVDVEAYALERSYDLLAPQLGSAHGELTVAVVDIGATMTTLSVLHNGRTIYSREQLFGGRQLTEEIQRRYGLSQ
EEAGLAKKQGGLPDDYDSEVLLPFKEAVVQQVSRSLQFFFAAGQFHDVDCILLAGGTASIPGLDHLIQQKIGTQTLVANP
FADMALSSKVNAGALASDAPSLMIACGLALRSFD

Nucleotide

• Length: 1065 bp

>NTDB_id=761332 OUY36_RS03190 WP_161611797.1 707528..708592(+) (comM) [Stutzerimonas sp. R40042]
GTGCTAGGGCTCTTCACTAAGAAAGCGAACACGCTGCTTGGGATCGATATCAGTTCGACCTCAGTCAAGCTTCTCGAATT
AAGTCGATCGGGGAACCGCTACCGGGTTGAGGCTTACGCGGTTGAGCCGCTCCCACCAAATGCCGTGGTCGAAAAGAACA
TCGCTGAACTGGAGGGCGTTGGCCAGGCTCTGCAGCGCGTGGTCGCAAAGGCTAAGACCGGCTGCAAGTCAGCCGTGGTA
GCCGTCTCCGGCTCAGCGGTGATTACCAAGACGATCGAGATGGACGCCGGGCTGTCCGACGAAGAGCTGGAAAACCAGCT
GAAGATCGAAGCCGACCAATATATTCCCTATCCGTTGGAAGAGGTGGCGATCGACTTCGAGGTCCAGGGCCCCGCGCCGC
GTGCGCCCGGTCGCGTCGAGGTTCTGCTCGCTGCCTGTCGCAAGGAAAACGTCGAAGTGCGCGAGGCGGCACTGGCTCTG
GCCGGGCTCTCCGCGAAGGTCGTTGATGTCGAGGCCTATGCGCTCGAGCGCTCCTATGACCTTCTGGCGCCGCAGTTGGG
GAGCGCGCATGGTGAACTGACCGTCGCTGTCGTGGATATCGGCGCAACGATGACGACTCTGAGCGTCCTGCATAACGGAC
GCACCATATACAGTCGTGAGCAATTGTTCGGGGGGCGGCAGCTGACGGAGGAAATCCAACGCCGTTATGGGCTGTCACAA
GAGGAGGCTGGCCTCGCTAAAAAGCAGGGAGGGCTTCCTGATGACTACGACAGTGAGGTTTTGCTTCCGTTCAAAGAAGC
GGTCGTTCAGCAGGTCTCACGCTCGCTGCAGTTCTTCTTCGCTGCTGGGCAGTTTCATGATGTCGATTGCATTCTGCTTG
CTGGTGGAACGGCTTCCATCCCGGGGCTTGATCATCTCATTCAGCAGAAGATCGGCACCCAGACTCTAGTTGCCAATCCG
TTTGCCGATATGGCTTTGAGTAGCAAGGTCAACGCGGGCGCGCTGGCCAGTGATGCGCCCTCGCTGATGATTGCGTGTGG
GTTGGCGCTAAGGAGTTTCGACTGA

Domains

Predicted by InterproScan.

• Type IV pilus assembly protein PilM; (PilM_2) (14-353)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Acinetobacter nosocomialis M2	56.497	100	0.565
pilM	Acinetobacter baumannii D1279779	56.497	100	0.565
comM	Acinetobacter baylyi ADP1	53.39	100	0.534
pilM	Legionella pneumophila strain ERS1305867	46.893	100	0.469