Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   OUY36_RS02920 Genome accession   NZ_CP113258
Coordinates   650890..652386 (-) Length   498 a.a.
NCBI ID   WP_267936717.1    Uniprot ID   -
Organism   Stutzerimonas sp. R40042     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 645890..657386
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OUY36_RS02910 (OUY36_02910) - 647114..648751 (+) 1638 WP_267938266.1 EAL domain-containing protein -
  OUY36_RS02915 (OUY36_02915) betT 648782..650758 (-) 1977 WP_152480766.1 choline BCCT transporter BetT -
  OUY36_RS02920 (OUY36_02920) comM 650890..652386 (-) 1497 WP_267936717.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  OUY36_RS02925 (OUY36_02925) - 652423..652683 (-) 261 WP_013981620.1 accessory factor UbiK family protein -
  OUY36_RS02930 (OUY36_02930) glnK 653080..653418 (+) 339 WP_003096476.1 P-II family nitrogen regulator -
  OUY36_RS02935 (OUY36_02935) - 653457..654773 (+) 1317 WP_267936720.1 ammonium transporter -
  OUY36_RS02940 (OUY36_02940) - 654896..656146 (+) 1251 WP_063539578.1 ammonium transporter -
  OUY36_RS02945 (OUY36_02945) - 656249..656674 (+) 426 WP_230726111.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  OUY36_RS02950 (OUY36_02950) sutA 656753..657079 (+) 327 WP_125868765.1 transcriptional regulator SutA -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 53322.16 Da        Isoelectric Point: 7.9499

>NTDB_id=761330 OUY36_RS02920 WP_267936717.1 650890..652386(-) (comM) [Stutzerimonas sp. R40042]
MSLAIVHSRAQIGVEAPAVTVEAHLANGLPALTLVGLPETAVKESKDRVRSAILSSGFDFPARRITLNLAPADLPKDGGR
FDLSIALGILAASGQLPNERLDKLECLGELALSGALRPVQGVLPAALAARAADRALLVPRANAEEASLASGLTVYAAEHL
LEVAAHFNGVTPLEPYVAQGLLRQVQPYPDLADVQGQQAAKRGLLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLDE
QEALEVAAIHSVASHSPLEHWPQRPFRQPHHSASGPALVGGGSRPQPGEITLAHQGVLFLDELPEFDRKVLEVLREPLES
GHIVIARARDKVRFPARFQLVAAMNPCPCGYLGDPNGRCRCTPEQIQRYRNKLSGPLLDRIDLHLTVAREATALNAPPQT
GQSSAVLAAQVAQARQRQLARQGCANAFLDLAGLRQHCQLTTEDQAWLERACERLALSLRAAHRLLKVARTLADMEQAER
ISRQHLAEALQYRPGSQA

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=761330 OUY36_RS02920 WP_267936717.1 650890..652386(-) (comM) [Stutzerimonas sp. R40042]
ATGTCCCTGGCCATCGTTCATAGCCGCGCGCAGATCGGCGTCGAAGCGCCGGCGGTGACCGTCGAAGCCCATCTGGCCAA
CGGTCTGCCGGCGCTGACCCTGGTCGGCCTGCCGGAAACCGCGGTCAAGGAAAGCAAGGATCGCGTGCGCAGCGCCATCC
TCAGCTCCGGCTTCGATTTTCCCGCACGACGCATCACCCTCAACCTCGCCCCCGCCGACCTGCCCAAGGACGGTGGCCGC
TTCGACCTGTCCATTGCCCTGGGCATCCTTGCCGCCAGCGGCCAGCTGCCCAACGAGCGGCTGGACAAACTGGAGTGCCT
GGGCGAGTTGGCCCTGTCCGGCGCCTTGCGCCCGGTGCAGGGTGTGCTGCCGGCCGCCCTTGCCGCACGTGCCGCCGACC
GTGCGCTGCTGGTGCCGCGGGCCAACGCCGAGGAAGCCAGCCTCGCCTCGGGCCTCACCGTCTATGCCGCCGAACACTTG
CTCGAGGTCGCCGCGCACTTCAACGGCGTCACGCCACTCGAGCCCTATGTTGCCCAGGGCCTGCTGCGGCAGGTCCAGCC
TTACCCTGACCTGGCCGACGTGCAGGGCCAGCAGGCGGCCAAGCGCGGCCTGCTGATCGCCGCGGCCGGTGCGCACAACC
TGCTGTTTTCCGGGCCACCCGGTACCGGCAAGACGCTGCTGGCCAGCCGCCTGCCCGGCCTGTTGCCGCCGCTGGACGAA
CAGGAGGCACTGGAAGTCGCCGCCATCCATTCGGTGGCCAGCCACAGCCCTCTGGAGCATTGGCCGCAACGCCCATTCCG
CCAGCCCCATCACAGTGCATCAGGGCCGGCGCTGGTCGGTGGCGGCAGCCGCCCGCAGCCGGGTGAAATCACCCTGGCGC
ATCAGGGTGTGCTGTTTCTCGACGAACTGCCGGAGTTCGATCGCAAGGTACTCGAGGTCCTGCGCGAGCCGCTGGAATCC
GGCCATATCGTCATCGCCCGGGCCCGCGACAAGGTGCGTTTTCCGGCGCGCTTTCAGCTCGTCGCGGCAATGAATCCCTG
CCCCTGTGGCTACCTGGGCGACCCCAACGGACGCTGCCGCTGCACGCCGGAGCAGATCCAGCGCTACCGCAACAAGCTCT
CCGGGCCGCTGCTCGACCGCATCGACCTGCACCTGACCGTGGCGCGCGAAGCAACCGCCCTCAACGCACCGCCGCAGACC
GGCCAGAGCAGCGCAGTACTGGCCGCGCAGGTCGCCCAGGCACGGCAGCGGCAACTCGCCCGTCAGGGCTGCGCCAACGC
CTTTCTCGATCTGGCCGGCCTGCGCCAGCACTGCCAGCTGACCACCGAGGACCAGGCCTGGCTGGAACGCGCCTGCGAAC
GCCTGGCGCTGTCGTTGCGCGCCGCGCACCGCCTGCTCAAGGTGGCGCGCACCCTCGCCGATATGGAACAGGCCGAGCGA
ATCAGCCGTCAGCACCTTGCCGAAGCGCTGCAGTACCGGCCCGGCAGTCAAGCCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.566

99.398

0.562
  comM Vibrio campbellii strain DS40M4

56.566

99.398

0.562
  comM Glaesserella parasuis strain SC1401

55.378

100

0.558
  comM Haemophilus influenzae Rd KW20

54.89

100

0.552
  comM Legionella pneumophila str. Paris

50.988

100

0.518
  comM Legionella pneumophila strain ERS1305867

50.988

100

0.518
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.123

100

0.466