Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   OSV15_RS02785 Genome accession   NZ_CP113257
Coordinates   602988..604484 (-) Length   498 a.a.
NCBI ID   WP_267932011.1    Uniprot ID   -
Organism   Stutzerimonas frequens strain TF18     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 597988..609484
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OSV15_RS02775 (OSV15_02775) - 599212..600849 (+) 1638 WP_267932935.1 putative bifunctional diguanylate cyclase/phosphodiesterase -
  OSV15_RS02780 (OSV15_02780) - 600880..602856 (-) 1977 WP_152480766.1 BCCT family transporter -
  OSV15_RS02785 (OSV15_02785) comM 602988..604484 (-) 1497 WP_267932011.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  OSV15_RS02790 (OSV15_02790) - 604521..604781 (-) 261 WP_013981620.1 accessory factor UbiK family protein -
  OSV15_RS02795 (OSV15_02795) glnK 605178..605516 (+) 339 WP_003096476.1 P-II family nitrogen regulator -
  OSV15_RS02800 (OSV15_02800) - 605555..606871 (+) 1317 WP_110778228.1 ammonium transporter -
  OSV15_RS02805 (OSV15_02805) - 606994..608244 (+) 1251 WP_267932013.1 ammonium transporter -
  OSV15_RS02810 (OSV15_02810) - 608347..608772 (+) 426 WP_226686865.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  OSV15_RS02815 (OSV15_02815) sutA 608851..609180 (+) 330 WP_267932015.1 transcriptional regulator SutA -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 53188.01 Da        Isoelectric Point: 8.1454

>NTDB_id=761298 OSV15_RS02785 WP_267932011.1 602988..604484(-) (comM) [Stutzerimonas frequens strain TF18]
MSLAIVHSRAQIGVEAPAVTVEAHLANGLPALTLVGLPETAVKESKDRVRSAILSSGFDFPARRITLNLAPADLPKDGGR
FDLSIALGILAASGQLPNERLDKLECLGELALSGALRPVQGVLPAALAARAAGRALLVPRANAEEASLASGLTVYAAEHL
LEVAAHFNGVTPLEPYVAQGLLRQVQPYPDLADVQGQQAAKRGLLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLDE
QEALEVAAIHSVASHSPLEHWPQRPFRQPHHSASGPALVGGGSRPQPGEITLAHQGVLFLDELPEFDRKVLEVLREPLES
GHIVIARARDKVRFPARFQLVAAMNPCPCGYLGDPNGRCRCTPEQIQRYRNKLSGPLLDRIDLHLTVAREATALNAPPQT
GQSSAVLAAQVAQARQRQLARQGCANAFLDLAGLRQHCQLGAEDQAWLERACERLALSLRAAHRLLKVARTLADLEQAER
ISRQHLAEALQYRPGSQS

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=761298 OSV15_RS02785 WP_267932011.1 602988..604484(-) (comM) [Stutzerimonas frequens strain TF18]
ATGTCCCTGGCCATCGTTCATAGCCGCGCGCAGATCGGCGTCGAAGCGCCGGCGGTGACCGTCGAAGCCCACCTGGCCAA
CGGTCTGCCGGCGCTGACCCTGGTCGGCCTGCCGGAAACCGCGGTCAAGGAAAGCAAGGACCGCGTGCGCAGCGCCATCC
TCAGCTCCGGCTTCGATTTTCCCGCACGACGTATCACCCTCAACCTCGCCCCTGCCGATCTGCCCAAGGACGGTGGCCGC
TTCGACCTGTCCATTGCCCTGGGCATCCTTGCCGCCAGCGGCCAGCTGCCCAACGAGCGGCTGGACAAACTGGAGTGCCT
GGGCGAGTTGGCCCTGTCCGGCGCCTTGCGCCCGGTGCAGGGCGTGCTGCCGGCCGCCCTTGCCGCACGTGCCGCCGGCC
GTGCGCTGCTGGTGCCGCGGGCCAACGCCGAGGAAGCCAGCCTCGCCTCGGGCCTCACCGTCTATGCCGCCGAGCACTTG
CTCGAGGTCGCCGCGCATTTCAACGGCGTCACGCCACTCGAGCCCTATGTTGCCCAAGGCCTGCTACGGCAGGTCCAGCC
TTACCCTGACCTGGCCGACGTGCAGGGCCAGCAGGCGGCCAAGCGCGGCCTGCTGATCGCCGCAGCCGGTGCGCACAACC
TGCTGTTTTCCGGGCCACCCGGTACCGGCAAGACGCTGCTGGCCAGCCGCCTGCCCGGCCTGTTGCCGCCGCTGGACGAA
CAGGAGGCGCTGGAAGTCGCGGCCATTCATTCGGTGGCCAGCCATAGCCCTCTCGAACATTGGCCGCAACGACCGTTCCG
CCAGCCCCATCACAGTGCATCAGGGCCGGCGCTGGTCGGTGGCGGCAGCCGCCCGCAGCCGGGTGAAATCACCCTGGCGC
ATCAGGGTGTGCTGTTTCTCGACGAACTGCCGGAGTTCGATCGCAAGGTACTCGAGGTGCTGCGCGAGCCGCTGGAATCC
GGCCACATCGTCATCGCCCGGGCCCGCGACAAGGTGCGTTTTCCGGCGCGCTTTCAGCTCGTCGCGGCGATGAATCCCTG
CCCCTGTGGCTACCTGGGCGACCCCAACGGACGCTGCCGCTGCACGCCGGAACAGATCCAGCGCTACCGCAACAAGCTCT
CCGGGCCGCTGCTCGACCGCATCGACCTGCACCTGACCGTGGCGCGCGAAGCAACCGCCCTCAACGCACCGCCGCAGACC
GGCCAGAGCAGCGCGGTGCTGGCCGCGCAGGTCGCCCAGGCACGGCAGCGGCAATTGGCCCGTCAGGGCTGCGCCAACGC
CTTTCTCGATCTGGCCGGCCTGCGCCAGCACTGCCAGCTCGGTGCCGAAGACCAGGCCTGGCTGGAACGCGCCTGCGAAC
GCCTGGCGCTGTCGTTGCGCGCTGCGCACCGCCTGCTCAAGGTGGCGCGCACCCTCGCCGATCTGGAGCAGGCCGAGCGA
ATCAGCCGTCAGCACCTTGCCGAAGCGCTGCAGTACCGCCCCGGCAGTCAAAGCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.768

99.398

0.564
  comM Vibrio campbellii strain DS40M4

56.768

99.398

0.564
  comM Glaesserella parasuis strain SC1401

55.378

100

0.558
  comM Haemophilus influenzae Rd KW20

55.09

100

0.554
  comM Legionella pneumophila str. Paris

50.988

100

0.518
  comM Legionella pneumophila strain ERS1305867

50.988

100

0.518
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.521

100

0.47