Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OOK74_RS01435 Genome accession   NZ_CP113241
Coordinates   300643..301176 (+) Length   177 a.a.
NCBI ID   WP_274723504.1    Uniprot ID   -
Organism   Vibrio sp. gvc     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 295643..306176
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OOK74_RS01425 galU 298461..299333 (-) 873 WP_277207138.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  OOK74_RS01430 qstR 299708..300352 (-) 645 WP_278182971.1 LuxR C-terminal-related transcriptional regulator Regulator
  OOK74_RS01435 ssb 300643..301176 (+) 534 WP_274723504.1 single-stranded DNA-binding protein Machinery gene
  OOK74_RS01440 csrD 301301..303313 (+) 2013 WP_274723503.1 RNase E specificity factor CsrD -
  OOK74_RS01445 - 303327..304784 (+) 1458 WP_278182972.1 MSHA biogenesis protein MshI -
  OOK74_RS01450 gspM 304781..305431 (+) 651 WP_274723501.1 type II secretion system protein GspM -
  OOK74_RS01455 - 305439..305741 (+) 303 WP_278183245.1 MSHA biogenesis protein MshK -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 19676.90 Da        Isoelectric Point: 5.2257

>NTDB_id=761085 OOK74_RS01435 WP_274723504.1 300643..301176(+) (ssb) [Vibrio sp. gvc]
MASRGVNKVILIGNLGQDPEVRYMPSGGAVANITIATSESWRDKTTGEQKEKTEWHRVTLYGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQNGQDRYSTDIVVQGYNGIMQMLGGRAQQGGMPAQGGMNPPAQQGNWGQPQQPVKQSQPIQQPAPQQYA
QPQYNEPPIDFDDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=761085 OOK74_RS01435 WP_274723504.1 300643..301176(+) (ssb) [Vibrio sp. gvc]
ATGGCAAGCCGTGGCGTGAACAAAGTAATTTTGATTGGTAACTTAGGCCAAGATCCTGAAGTGCGTTATATGCCAAGTGG
TGGCGCGGTAGCGAATATTACCATTGCGACTTCTGAAAGCTGGCGTGATAAAACGACCGGTGAACAGAAGGAAAAAACCG
AATGGCACCGTGTGACGCTGTATGGAAAATTGGCAGAAGTTGCAGGTGAATATTTGCGTAAAGGCTCTCAAGTTTATATT
GAAGGTCAATTGCAAACGCGTAAATGGCAAGATCAGAATGGTCAAGATCGTTACTCTACCGATATCGTGGTGCAAGGCTA
TAACGGGATCATGCAGATGCTTGGTGGCCGTGCACAACAAGGCGGTATGCCAGCCCAAGGTGGTATGAATCCTCCTGCGC
AGCAAGGTAACTGGGGGCAACCACAGCAGCCGGTTAAACAGTCTCAACCGATCCAGCAACCTGCGCCGCAACAATATGCT
CAGCCGCAATATAATGAGCCCCCGATCGATTTTGATGATGACATCCCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

92.655

100

0.927
  ssb Glaesserella parasuis strain SC1401

51.323

100

0.548
  ssb Neisseria gonorrhoeae MS11

47.778

100

0.486
  ssb Neisseria meningitidis MC58

47.222

100

0.48