Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   OOK74_RS01430 Genome accession   NZ_CP113241
Coordinates   299708..300352 (-) Length   214 a.a.
NCBI ID   WP_278182971.1    Uniprot ID   -
Organism   Vibrio sp. gvc     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 294708..305352
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OOK74_RS01420 uvrA 295479..298301 (-) 2823 WP_278182970.1 excinuclease ABC subunit UvrA -
  OOK74_RS01425 galU 298461..299333 (-) 873 WP_277207138.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  OOK74_RS01430 qstR 299708..300352 (-) 645 WP_278182971.1 LuxR C-terminal-related transcriptional regulator Regulator
  OOK74_RS01435 ssb 300643..301176 (+) 534 WP_274723504.1 single-stranded DNA-binding protein Machinery gene
  OOK74_RS01440 csrD 301301..303313 (+) 2013 WP_274723503.1 RNase E specificity factor CsrD -
  OOK74_RS01445 - 303327..304784 (+) 1458 WP_278182972.1 MSHA biogenesis protein MshI -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24612.37 Da        Isoelectric Point: 9.6828

>NTDB_id=761084 OOK74_RS01430 WP_278182971.1 299708..300352(-) (qstR) [Vibrio sp. gvc]
MQRANYARTIYLLTPQPQDLDPAIQAAITTLDLPIPIIEPPRLLQDFQSDKHKILLLDHRQSGQIRQQLGPLKLTSPYFE
TILFNVAKRLKTDELLTFGNLKGLFYASDETDFIAHGLGEIINGQNWLPRHVSSQLLHYYRYAFQTHQTQATVDLTAREI
QILRSLQTGASNMQIAESLFISEFTVKSHLYQIFKKLNVKNRVKAIAWVNQNIL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=761084 OOK74_RS01430 WP_278182971.1 299708..300352(-) (qstR) [Vibrio sp. gvc]
ATGCAACGAGCCAATTACGCCCGCACTATTTACTTACTCACCCCTCAGCCACAGGATTTAGACCCTGCTATTCAGGCGGC
AATCACCACACTGGATTTGCCGATTCCTATTATTGAGCCACCACGTTTATTGCAAGACTTTCAATCTGATAAGCATAAAA
TTCTGCTGCTCGACCATCGGCAGAGCGGCCAAATTCGCCAGCAACTTGGACCACTGAAACTCACCAGTCCCTACTTTGAA
ACGATTTTATTTAACGTAGCTAAGCGCTTAAAAACTGACGAACTACTAACTTTTGGTAACTTGAAGGGGCTGTTTTATGC
CAGTGATGAAACTGATTTCATTGCCCATGGGCTAGGTGAAATTATCAATGGTCAAAATTGGTTACCGCGCCATGTGAGCA
GTCAATTATTGCACTACTATCGTTATGCATTCCAAACTCATCAAACACAAGCGACCGTCGATCTCACCGCTCGTGAAATT
CAAATTCTGCGCAGCTTACAAACTGGTGCATCCAATATGCAAATTGCTGAAAGTTTATTTATCAGTGAGTTCACGGTTAA
ATCACATTTATATCAAATATTTAAGAAGTTAAATGTCAAAAACCGCGTCAAAGCAATTGCTTGGGTGAACCAAAATATAT
TGTGA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio cholerae strain A1552

85.514

100

0.855
  qstR Vibrio campbellii strain DS40M4

52.804

100

0.528
  qstR Vibrio parahaemolyticus RIMD 2210633

52.336

100

0.523