Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   OOK74_RS00090 Genome accession   NZ_CP113241
Coordinates   21771..23294 (+) Length   507 a.a.
NCBI ID   WP_277207617.1    Uniprot ID   -
Organism   Vibrio sp. gvc     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 16771..28294
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OOK74_RS00075 ilvE 18226..19164 (-) 939 WP_278182837.1 branched-chain-amino-acid transaminase -
  OOK74_RS00080 ilvM 19176..19460 (-) 285 WP_166013981.1 acetolactate synthase 2 small subunit -
  OOK74_RS00085 ilvG 19472..21118 (-) 1647 WP_277207649.1 acetolactate synthase 2 catalytic subunit -
  OOK74_RS00090 comM 21771..23294 (+) 1524 WP_277207617.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  OOK74_RS00095 - 23388..23993 (-) 606 WP_166013979.1 thiol:disulfide interchange protein DsbA/DsbL -
  OOK74_RS00100 - 24039..25025 (-) 987 WP_278183241.1 serine/threonine protein kinase -
  OOK74_RS00105 ccoG 25073..26494 (-) 1422 WP_278182838.1 cytochrome c oxidase accessory protein CcoG -
  OOK74_RS00110 - 26767..27033 (-) 267 WP_166013977.1 DUF1040 family protein -
  OOK74_RS00115 - 27201..27368 (-) 168 WP_274723446.1 hypothetical protein -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54987.29 Da        Isoelectric Point: 10.0777

>NTDB_id=761081 OOK74_RS00090 WP_277207617.1 21771..23294(+) (comM) [Vibrio sp. gvc]
MGLAIIHSRASIGVQAPPVTVEVHISNGMPGFTLVGLPETTVKESRDRVRSAIINSRFEFPAKRITVNLAPADLPKEGGR
FDLPIALGILVASEQIARTKLEGYEFIGELALSGKIRRVKGVLPAALAANQVQRSLVVPHANGDQAALVKGAAHKSAHSL
LEVCADLCGQKNLSLFQSAPSEQPPPSSRDLQDIIGQQQGKRALEIAAAGSHNLLFLGPPGTGKTMLASRLCDLLPPMSD
QEAIETASIASLTQQEINQHNWKLRPFRAPHHSSSMAALVGGGTIPRPGEISLAHNGLLFLDEMPEFERKVLDSLREPLE
SGEIVISRAQGKTRFPARFQLVGALNPSPTGYYQGSQARANPQTILRYLSRLSGPLLDRFDMSIEIPALPKGTLAHGGDR
GESTAAVRQRVMVARERMLDRAGKVNALLQSREIDRDCPLLKADAEFLESALHRLGLSIRAYHRIIKVARTIADLQGEKQ
ITRAHLAEALGYRSMDRLLRQLSAQNV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=761081 OOK74_RS00090 WP_277207617.1 21771..23294(+) (comM) [Vibrio sp. gvc]
ATGGGACTTGCGATTATTCACAGTCGGGCCAGTATTGGTGTGCAGGCTCCTCCGGTCACGGTTGAGGTGCACATCAGTAA
CGGAATGCCCGGTTTCACATTAGTCGGTCTGCCAGAAACCACCGTTAAAGAATCACGCGATCGGGTGCGCAGCGCGATTA
TTAATTCCCGCTTTGAGTTTCCAGCCAAAAGAATAACCGTTAATTTAGCGCCGGCGGATCTACCTAAGGAGGGAGGACGA
TTTGATTTGCCGATCGCGCTGGGCATTTTGGTCGCTTCAGAGCAAATTGCACGAACTAAGCTGGAAGGTTACGAATTTAT
TGGTGAACTGGCGCTATCGGGGAAGATCCGTCGTGTAAAAGGGGTGTTGCCTGCCGCCTTGGCGGCCAACCAAGTGCAGC
GAAGTTTAGTGGTGCCACATGCTAATGGCGATCAAGCGGCGTTGGTTAAGGGTGCAGCGCATAAGTCTGCGCACAGTTTG
CTTGAAGTGTGTGCCGATCTGTGTGGTCAAAAAAACTTGTCGCTGTTTCAAAGTGCGCCGAGTGAGCAGCCACCGCCAAG
CAGCCGTGATTTACAAGATATTATTGGTCAGCAGCAAGGGAAACGCGCATTAGAAATTGCCGCCGCTGGCAGTCATAATT
TGCTGTTTTTAGGTCCTCCCGGCACTGGCAAAACCATGTTGGCGTCTCGTTTGTGTGATTTATTGCCGCCCATGAGTGAT
CAAGAAGCGATCGAAACCGCCTCAATTGCTTCGCTGACTCAGCAGGAGATTAACCAACACAATTGGAAATTGCGCCCGTT
TCGCGCTCCCCATCACTCCAGTTCCATGGCGGCATTGGTTGGTGGCGGTACGATTCCGCGTCCTGGCGAAATATCGTTAG
CGCATAACGGGTTATTATTTTTGGACGAAATGCCTGAGTTTGAACGCAAGGTGCTCGATTCGCTGCGTGAGCCATTGGAG
TCGGGCGAGATTGTGATTTCTCGTGCGCAAGGTAAAACCCGTTTTCCCGCTCGTTTTCAATTGGTTGGCGCGTTAAACCC
CAGCCCAACCGGTTATTATCAAGGCAGCCAAGCGCGGGCTAATCCACAGACGATCTTGCGCTATTTAAGTCGGCTCTCTG
GCCCGTTGTTGGATCGGTTTGATATGTCGATTGAGATCCCAGCGCTACCGAAAGGCACTTTAGCTCATGGAGGTGATCGT
GGTGAGTCGACCGCGGCGGTGCGTCAGCGTGTGATGGTGGCGCGTGAGCGAATGTTAGATCGTGCTGGCAAGGTAAACGC
TTTGCTGCAAAGTCGTGAGATTGATCGTGATTGCCCATTGCTGAAGGCGGATGCTGAGTTTTTGGAGAGTGCCTTGCATC
GGCTCGGTTTGTCGATTCGGGCTTATCACCGGATTATTAAGGTGGCACGTACCATCGCTGATTTGCAGGGGGAAAAGCAG
ATCACGCGGGCTCATTTGGCCGAAGCGCTCGGTTATCGCTCGATGGATCGCTTGCTTAGGCAGCTTAGTGCGCAGAATGT
GTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

91.913

100

0.919
  comM Vibrio campbellii strain DS40M4

82.84

100

0.828
  comM Haemophilus influenzae Rd KW20

66.075

100

0.661
  comM Glaesserella parasuis strain SC1401

63.529

100

0.639
  comM Legionella pneumophila str. Paris

50.202

97.83

0.491
  comM Legionella pneumophila strain ERS1305867

50.202

97.83

0.491
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.107

100

0.438