Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   MKJ05_RS16900 Genome accession   NZ_CP113163
Coordinates   3542059..3543579 (+) Length   506 a.a.
NCBI ID   WP_267585590.1    Uniprot ID   -
Organism   Citrobacter braakii strain LBA3     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 3537059..3548579
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKJ05_RS16880 (MKJ05_16880) - 3538615..3539544 (-) 930 WP_003018014.1 branched-chain amino acid transaminase -
  MKJ05_RS16885 (MKJ05_16885) ilvM 3539562..3539825 (-) 264 WP_003018017.1 acetolactate synthase 2 small subunit -
  MKJ05_RS16890 (MKJ05_16890) ilvG 3539822..3541468 (-) 1647 WP_199143993.1 acetolactate synthase 2 catalytic subunit -
  MKJ05_RS16895 (MKJ05_16895) ilvL 3541608..3541706 (-) 99 WP_001311244.1 ilv operon leader peptide -
  MKJ05_RS16900 (MKJ05_16900) comM 3542059..3543579 (+) 1521 WP_267585590.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  MKJ05_RS16905 (MKJ05_16905) maoP 3543604..3543942 (-) 339 WP_003018025.1 macrodomain Ori organization protein MaoP -
  MKJ05_RS16910 (MKJ05_16910) hdfR 3544049..3544894 (+) 846 WP_085951100.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55194.12 Da        Isoelectric Point: 7.1474

>NTDB_id=760693 MKJ05_RS16900 WP_267585590.1 3542059..3543579(+) (comM) [Citrobacter braakii strain LBA3]
MSLSIVHTRAALGVNAPAITIEVHISNGLPGLTMVGLPETTVKEARDRVRSAIINSGYEFPAKKITINLAPADLPKEGGR
YDLPIAVALLAASEQLTTHNLDTYELVGELALTGALRGVPGAISSATEAIRAGRRIIVAKENAAEVGLIHGEGCLIADHL
QAVCAFLEGKHDLDRPSSADFTPNALPDDLSDVIGQEQGKRGLELTAAGGHNLLLIGPPGTGKTMLASRLRGLLPPLSND
EALESAAILSLINSDTIQKQWKQRPFRSPHHSASLTAMVGGGSIPAPGEISLAHNGILFLDELPEFERRTLDALREPIES
GQIHLSRTRAKITYPARFQLIAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSQSAMKG
ENSATVKQRVMAARERQYQRQDKLNAHLNSQDIHKYCQLRDDDAQWLEETLAHLGLSIRAWLRLIKVARTIADIEQCDHI
SRQHLQEAVGYRAIDRLLIHLQKLLT

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=760693 MKJ05_RS16900 WP_267585590.1 3542059..3543579(+) (comM) [Citrobacter braakii strain LBA3]
ATGTCGCTATCGATTGTTCACACACGCGCCGCGCTAGGCGTGAATGCACCAGCCATTACCATCGAGGTACATATCAGCAA
CGGCCTGCCTGGTTTAACCATGGTGGGGCTGCCCGAAACGACGGTGAAAGAGGCTCGCGATCGGGTACGCAGTGCGATTA
TTAATAGCGGTTATGAATTCCCGGCAAAGAAGATAACCATAAACCTCGCTCCGGCCGATCTCCCGAAAGAAGGGGGACGA
TATGATTTACCCATCGCTGTTGCGCTTCTGGCCGCTTCTGAGCAGCTTACAACCCATAATCTCGATACCTACGAGCTGGT
AGGCGAATTAGCCCTTACAGGCGCGTTACGCGGCGTTCCCGGCGCGATATCAAGCGCAACCGAAGCCATTCGTGCAGGCA
GGCGAATCATTGTCGCGAAAGAGAATGCCGCTGAAGTTGGACTGATACACGGTGAAGGGTGCCTGATCGCCGATCACCTG
CAGGCTGTGTGCGCATTTCTCGAAGGTAAGCATGATTTAGACAGGCCATCATCCGCAGATTTTACGCCCAACGCATTACC
CGATGATCTGAGCGATGTTATCGGCCAGGAACAGGGTAAACGCGGGCTGGAGCTTACAGCTGCTGGCGGCCACAACCTCT
TGCTCATCGGTCCGCCGGGTACGGGCAAAACCATGCTAGCCAGTCGCCTCAGAGGGCTGCTCCCTCCACTTAGCAACGAT
GAAGCGCTGGAAAGTGCCGCGATACTCAGTCTGATCAATTCCGACACGATTCAAAAACAGTGGAAGCAACGCCCTTTTCG
CTCGCCACATCACAGTGCTTCATTAACCGCCATGGTCGGTGGAGGCTCTATTCCTGCGCCAGGAGAGATCTCTCTGGCGC
ACAACGGCATACTGTTCCTGGATGAGCTACCCGAGTTTGAGCGGCGCACGCTGGATGCACTGCGCGAGCCCATCGAGTCC
GGGCAGATCCATCTATCCCGCACCAGAGCAAAAATAACCTATCCTGCACGCTTTCAGCTCATAGCTGCGATGAATCCAAG
CCCGACAGGCCATTATCAGGGGAATCATAACCGCTGTACCCCAGAACAGACGCTGCGCTACCTAAATCGATTGTCAGGTC
CATTTCTTGACCGCTTCGACCTCTCCCTCGAAATTCCTTTACCGCCGCCCGGCATACTCAGCCAGAGCGCGATGAAAGGG
GAAAATAGCGCAACGGTGAAGCAACGCGTTATGGCAGCGCGAGAGCGTCAGTATCAGCGGCAAGACAAGTTAAACGCACA
TCTGAACAGTCAGGATATCCATAAATATTGCCAACTGCGCGACGACGATGCCCAGTGGCTTGAAGAAACGCTCGCGCATC
TCGGATTGTCTATCCGCGCCTGGCTACGCTTGATTAAGGTCGCTCGAACGATTGCGGATATCGAACAATGTGATCACATC
TCTCGCCAGCATTTACAGGAGGCCGTTGGGTACCGGGCGATAGACAGGTTACTCATTCATCTGCAGAAACTACTGACATA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

57.926

100

0.585
  comM Vibrio cholerae strain A1552

58.566

99.209

0.581
  comM Glaesserella parasuis strain SC1401

57.564

100

0.579
  comM Vibrio campbellii strain DS40M4

57.738

99.605

0.575
  comM Legionella pneumophila str. Paris

47.485

98.221

0.466
  comM Legionella pneumophila strain ERS1305867

47.485

98.221

0.466
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.056

99.605

0.429