Detailed information    

insolico Bioinformatically predicted

Overview


Name   comGG/cglG   Type   Machinery gene
Locus tag   OTU45_RS10790 Genome accession   NZ_CP113114
Coordinates   2094192..2094605 (-) Length   137 a.a.
NCBI ID   WP_000265624.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain NP1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 2089192..2099605
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OTU45_RS10760 (OTU45_10760) - 2089887..2090711 (-) 825 WP_000727904.1 membrane protein insertase YidC -
  OTU45_RS10765 (OTU45_10765) rnpA 2090686..2091057 (-) 372 WP_000739246.1 ribonuclease P protein component -
  OTU45_RS10770 (OTU45_10770) - 2091074..2091205 (-) 132 WP_000768904.1 hypothetical protein -
  OTU45_RS10775 (OTU45_10775) - 2091206..2092396 (-) 1191 WP_000167766.1 acetate kinase -
  OTU45_RS10780 (OTU45_10780) comYH 2092447..2093400 (-) 954 WP_000345101.1 class I SAM-dependent methyltransferase Machinery gene
  OTU45_RS10785 (OTU45_10785) - 2093461..2094055 (-) 595 Protein_2108 class I SAM-dependent methyltransferase -
  OTU45_RS10790 (OTU45_10790) comGG/cglG 2094192..2094605 (-) 414 WP_000265624.1 competence type IV pilus minor pilin ComGG Machinery gene
  OTU45_RS10795 (OTU45_10795) comGF/cglF 2094583..2095044 (-) 462 WP_000250542.1 competence type IV pilus minor pilin ComGF Machinery gene
  OTU45_RS10800 (OTU45_10800) comGE/cglE 2095007..2095309 (-) 303 WP_000413382.1 competence type IV pilus minor pilin ComGE Machinery gene
  OTU45_RS10805 (OTU45_10805) comGD/cglD 2095272..2095676 (-) 405 WP_000588013.1 competence type IV pilus minor pilin ComGD Machinery gene
  OTU45_RS10810 (OTU45_10810) comGC/cglC 2095669..2095935 (-) 267 WP_050073122.1 competence type IV pilus major pilin ComGC Machinery gene
  OTU45_RS10815 (OTU45_10815) - 2095937..2096194 (-) 258 WP_000698513.1 hypothetical protein -
  OTU45_RS10820 (OTU45_10820) lytA 2096426..2097382 (-) 957 WP_054436120.1 N-acetylmuramoyl-L-alanine amidase LytA -
  OTU45_RS10825 (OTU45_10825) - 2097382..2097717 (-) 336 WP_001186204.1 phage holin -
  OTU45_RS10830 (OTU45_10830) - 2097721..2098020 (-) 300 WP_001811580.1 hypothetical protein -
  OTU45_RS10835 (OTU45_10835) - 2098030..2098380 (-) 351 WP_054368148.1 hypothetical protein -
  OTU45_RS10840 (OTU45_10840) - 2098383..2098586 (-) 204 WP_001091107.1 hypothetical protein -
  OTU45_RS10845 (OTU45_10845) - 2098567..2098683 (-) 117 WP_001063632.1 hypothetical protein -

Sequence


Protein


Download         Length: 137 a.a.        Molecular weight: 15955.42 Da        Isoelectric Point: 10.2472

>NTDB_id=760371 OTU45_RS10790 WP_000265624.1 2094192..2094605(-) (comGG/cglG) [Streptococcus pneumoniae strain NP1]
MWKKKKVKAGVLLYAVTIAAIFSLLLQFYLNRQVAHYQDYALNKEKLVAFAMAKRTKDKVEQESGEQVFNLGQVSYQNKK
TGLVTRVRTDKSQYEFLFPSVKIKEEKRDKKEEVATDSSEKVEKKKSEEKPEKKENS

Nucleotide


Download         Length: 414 bp        

>NTDB_id=760371 OTU45_RS10790 WP_000265624.1 2094192..2094605(-) (comGG/cglG) [Streptococcus pneumoniae strain NP1]
GTGTGGAAAAAGAAAAAAGTTAAGGCAGGTGTTCTCCTCTACGCAGTCACCATAGCAGCCATCTTTAGTCTTTTGTTGCA
ATTTTATTTGAACCGACAAGTCGCCCACTATCAAGACTATGCTTTGAATAAAGAAAAATTGGTTGCTTTTGCTATGGCTA
AACGAACCAAAGATAAGGTTGAGCAAGAAAGTGGGGAACAGGTTTTTAATCTAGGTCAGGTAAGCTATCAAAACAAGAAA
ACTGGCTTAGTGACGAGGGTTCGTACGGATAAGAGCCAATATGAGTTTCTGTTTCCTTCAGTCAAAATCAAAGAAGAGAA
AAGAGATAAAAAGGAAGAGGTAGCGACCGATTCAAGCGAAAAAGTGGAGAAGAAAAAATCAGAAGAGAAGCCTGAAAAGA
AAGAGAATTCCTAG

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG/cglG Streptococcus pneumoniae Rx1

99.27

100

0.993

  comGG/cglG Streptococcus pneumoniae D39

99.27

100

0.993

  comGG/cglG Streptococcus pneumoniae R6

99.27

100

0.993

  comGG/cglG Streptococcus pneumoniae TIGR4

99.27

100

0.993

  comGG/cglG Streptococcus mitis SK321

87.591

100

0.876

  comGG/cglG Streptococcus mitis NCTC 12261

89.256

88.321

0.788

  comYG Streptococcus mutans UA140

38.806

97.81

0.38

  comYG Streptococcus mutans UA159

38.806

97.81

0.38