Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   OSW16_RS01120 Genome accession   NZ_CP113097
Coordinates   233528..235018 (-) Length   496 a.a.
NCBI ID   WP_267820106.1    Uniprot ID   -
Organism   Pseudomonas putida strain WYTS.T61     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 228528..240018
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OSW16_RS01100 (OSW16_01100) - 229272..231059 (-) 1788 WP_267820100.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  OSW16_RS01105 (OSW16_01105) - 231221..231423 (-) 203 Protein_219 helix-turn-helix domain-containing protein -
  OSW16_RS01110 (OSW16_01110) - 231601..232908 (-) 1308 WP_267820102.1 Nramp family divalent metal transporter -
  OSW16_RS01115 (OSW16_01115) - 233128..233388 (-) 261 WP_267820104.1 DUF2790 domain-containing protein -
  OSW16_RS01120 (OSW16_01120) comM 233528..235018 (-) 1491 WP_267820106.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  OSW16_RS01125 (OSW16_01125) - 235244..237271 (+) 2028 WP_267820108.1 DUF4034 domain-containing protein -
  OSW16_RS01130 (OSW16_01130) - 237288..237551 (-) 264 WP_241804976.1 accessory factor UbiK family protein -
  OSW16_RS01135 (OSW16_01135) glnK 237917..238255 (+) 339 WP_002555808.1 P-II family nitrogen regulator -
  OSW16_RS01140 (OSW16_01140) - 238304..239638 (+) 1335 WP_241804977.1 ammonium transporter -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 53010.76 Da        Isoelectric Point: 7.3853

>NTDB_id=760167 OSW16_RS01120 WP_267820106.1 233528..235018(-) (comM) [Pseudomonas putida strain WYTS.T61]
MSLALVHSRAQVGVQAPAVSVETHLANGLPTLTLVGLPETTVKESKDRVRSAIVNSGLNYPQRRITQNLAPADLPKDGGR
YDLAIALGILAADGQVPVATLTDIECLGELALSGKLRPVQGVLPAALAAREAGRALVVPRENAEEASLAGGLVVYAVGHL
LELVAHLNGLVPLPPFAANGLLLHSRPYPDLSEVQGQVAAKRALLLAASGAHNLLFTGPPGTGKTLLASRLPGLLPPLDE
HEALEVAAIQSVSGHKPLDSWPQRPFRHPHHSASGPALVGGGSRPQPGEITLAHHGVLFLDELPEFERRVLEVLREPLES
GEIVIARARDKVRFPARFQLVAAMNPCPCGYLGDPTGRCRCSTEQIQRYRNKLSGPLLDRIDLHLTVARETTTLNNQPCG
DTSADVAAQVAEAREVQYRRQGCANAFLDLEGLRQHCELRAADQAWLESACERLTLSLRAAHRLLKVARTLADLEGASTI
AKAHLAEALQYRPGSH

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=760167 OSW16_RS01120 WP_267820106.1 233528..235018(-) (comM) [Pseudomonas putida strain WYTS.T61]
ATGTCCCTTGCCCTCGTCCACAGCCGCGCCCAGGTTGGCGTGCAGGCACCGGCGGTCAGCGTCGAAACTCACCTGGCCAA
CGGGCTGCCCACTCTCACGCTGGTCGGCCTGCCCGAAACCACGGTCAAGGAAAGCAAGGACCGGGTGCGCAGCGCCATCG
TCAACTCCGGGCTGAACTACCCGCAAAGGCGCATCACCCAGAACCTGGCACCGGCAGACCTGCCCAAGGATGGCGGGCGC
TACGACCTGGCCATCGCCCTGGGCATCCTTGCCGCTGACGGTCAGGTGCCGGTGGCCACATTGACCGATATCGAATGCCT
GGGCGAACTGGCGCTGTCTGGCAAGCTGCGCCCGGTTCAGGGCGTGCTGCCTGCGGCACTGGCGGCGCGCGAGGCTGGCC
GGGCATTGGTAGTGCCGCGGGAAAACGCCGAAGAGGCGAGCCTGGCGGGTGGGCTGGTGGTGTACGCGGTGGGGCACCTG
CTGGAACTGGTGGCGCACCTCAACGGCCTGGTACCTCTGCCTCCCTTTGCCGCTAACGGTCTATTGCTGCACAGCCGCCC
CTACCCCGACCTCAGCGAGGTGCAGGGCCAGGTAGCCGCCAAGCGTGCGTTACTGCTGGCGGCCTCAGGTGCTCATAACC
TGCTGTTCACCGGCCCGCCCGGCACAGGCAAGACACTGCTCGCCAGCCGCCTGCCCGGCCTGCTGCCGCCGCTGGATGAA
CATGAAGCGCTCGAAGTGGCAGCCATCCAGTCGGTAAGCGGGCACAAACCCCTCGATAGCTGGCCGCAACGGCCGTTTCG
CCATCCGCACCACTCAGCGTCCGGGCCCGCGCTGGTCGGCGGAGGCAGCCGGCCGCAACCAGGTGAAATCACCTTGGCGC
ACCATGGGGTACTGTTTCTCGATGAATTGCCGGAGTTTGAGCGTCGTGTACTTGAGGTGCTTCGCGAGCCGCTGGAGTCT
GGCGAGATCGTGATTGCCCGGGCACGGGACAAAGTACGCTTTCCGGCGCGCTTCCAACTGGTGGCGGCCATGAACCCCTG
CCCTTGCGGCTACCTGGGCGACCCCACCGGCCGCTGCCGCTGCAGCACCGAACAGATCCAGCGCTACCGCAACAAGCTTT
CCGGCCCGCTGCTGGACCGCATCGATCTGCACCTTACCGTGGCGCGTGAAACCACCACGCTCAACAACCAACCTTGCGGC
GATACCAGCGCCGACGTGGCCGCCCAGGTGGCCGAGGCACGCGAGGTGCAGTACCGGCGGCAAGGCTGTGCCAATGCGTT
TCTGGACCTCGAGGGGCTGCGCCAGCACTGCGAATTGCGCGCTGCCGACCAGGCCTGGCTGGAGAGTGCCTGCGAGCGCC
TGACACTTTCCCTGCGCGCCGCCCACAGGCTGTTGAAGGTGGCCCGCACGCTGGCTGACTTGGAGGGGGCCAGTACGATT
GCCAAGGCGCACCTGGCCGAAGCCCTGCAGTACCGGCCCGGAAGTCACTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.152

99.798

0.55
  comM Haemophilus influenzae Rd KW20

54.6

100

0.55
  comM Vibrio campbellii strain DS40M4

54.819

100

0.55
  comM Glaesserella parasuis strain SC1401

54.183

100

0.548
  comM Legionella pneumophila str. Paris

49.702

100

0.504
  comM Legionella pneumophila strain ERS1305867

49.702

100

0.504
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.918

100

0.476