Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   H7R23_RS18590 Genome accession   NZ_AP021936
Coordinates   3876049..3877182 (+) Length   377 a.a.
NCBI ID   WP_032063701.1    Uniprot ID   A0A009RR97
Organism   Acinetobacter pittii strain WP2-W18-ESBL-11     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 3871049..3882182
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7R23_RS18565 (WP2W18E11_36200) - 3871309..3871515 (-) 207 WP_017387367.1 hypothetical protein -
  H7R23_RS18570 (WP2W18E11_36210) oprC 3871565..3873679 (-) 2115 WP_182917681.1 TonB-dependent copper receptor -
  H7R23_RS18575 (WP2W18E11_36220) - 3873752..3874177 (-) 426 WP_005804747.1 DUF2946 family protein -
  H7R23_RS18580 (WP2W18E11_36230) def 3874221..3874751 (-) 531 WP_002114101.1 peptide deformylase -
  H7R23_RS18585 (WP2W18E11_36240) tsaP 3874874..3876028 (+) 1155 WP_032063700.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  H7R23_RS18590 (WP2W18E11_36250) dprA 3876049..3877182 (+) 1134 WP_032063701.1 DNA-processing protein DprA Machinery gene
  H7R23_RS18595 (WP2W18E11_36260) yrdC 3877234..3877803 (+) 570 WP_005804750.1 L-threonylcarbamoyladenylate synthase -
  H7R23_RS18600 (WP2W18E11_36270) - 3878195..3879115 (-) 921 WP_182917682.1 DMT family transporter -
  H7R23_RS18605 (WP2W18E11_36280) - 3879219..3879872 (-) 654 WP_079377716.1 TetR/AcrR family transcriptional regulator -
  H7R23_RS18610 (WP2W18E11_36290) nepI 3880008..3881222 (+) 1215 WP_068550927.1 MFS transporter -
  H7R23_RS18615 (WP2W18E11_36300) - 3881244..3882008 (+) 765 WP_017387374.1 AraC family transcriptional regulator -

Sequence


Protein


Download         Length: 377 a.a.        Molecular weight: 41840.53 Da        Isoelectric Point: 6.8732

>NTDB_id=76001 H7R23_RS18590 WP_032063701.1 3876049..3877182(+) (dprA) [Acinetobacter pittii strain WP2-W18-ESBL-11]
MLTQLSSHHYHTLKVWYLVQHSLVSFKKIVDYFGSCEKALQPAGLSQWRNLGLHANHLKRVAEFQTAQGLAQFEKLIQQI
HQHTDFILTKDDSGYPTQLLPYTDHPPIIFGKGQAQALLQPQIAIVGSRKPSPHGRQVAYDFAYYLSEKGFYVSSGLAYG
IDEAAHQGASAHQRTIAVTGTGLDSTYPAQNKKLAEHILAQNGAIITEFLPGTPPLQQHFPRRNRIVSGLSLGVLVVEAT
LKSGSLITANKAAEQGKTVFAIPGHIYSEFHQGCHQLIREGAILVDHPEQIIEDLALPTQWQSQQQNSTEEAVVSSTPEI
PEHLINLYQSLDWVGQNIDQLVLHHSQPVAELTSSLMELELLGLCMQQSGLYLRCRS

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=76001 H7R23_RS18590 WP_032063701.1 3876049..3877182(+) (dprA) [Acinetobacter pittii strain WP2-W18-ESBL-11]
ATGCTTACTCAACTTTCTTCACACCATTACCACACGCTTAAAGTGTGGTATTTGGTGCAACACTCTTTAGTCAGCTTTAA
AAAGATTGTCGATTATTTTGGTAGCTGTGAAAAGGCGCTCCAACCTGCTGGATTATCTCAATGGCGCAATCTCGGGTTAC
ATGCTAATCATTTAAAACGCGTAGCTGAGTTTCAAACCGCTCAAGGTCTAGCTCAGTTTGAAAAACTAATTCAACAGATC
CATCAACATACTGACTTTATTTTAACGAAAGATGACTCAGGCTATCCCACTCAGTTATTACCTTATACAGACCATCCACC
TATAATTTTTGGAAAAGGCCAAGCTCAAGCTTTATTGCAACCGCAAATTGCGATTGTCGGCAGTCGAAAACCAAGCCCGC
ATGGTCGCCAAGTTGCTTATGATTTTGCCTATTATTTAAGTGAAAAAGGTTTTTATGTGAGTAGTGGCTTAGCATATGGC
ATTGATGAAGCTGCTCACCAAGGAGCATCAGCACATCAACGTACGATTGCTGTGACAGGAACAGGTTTAGACAGTACCTA
CCCTGCTCAAAATAAAAAACTTGCAGAACATATTTTGGCTCAAAACGGCGCCATCATTACTGAGTTTTTGCCTGGAACAC
CTCCATTACAACAACATTTCCCACGTAGAAACCGAATTGTCAGCGGTTTGAGTTTAGGCGTGTTAGTGGTAGAAGCTACA
TTAAAAAGTGGTTCTCTCATCACTGCGAACAAAGCTGCCGAACAAGGTAAAACTGTATTTGCCATTCCTGGTCATATTTA
CAGTGAGTTTCATCAAGGTTGCCATCAACTTATTCGTGAGGGAGCAATTTTAGTCGATCATCCTGAACAAATTATTGAAG
ACCTTGCTTTACCCACTCAGTGGCAAAGTCAGCAACAGAACTCCACCGAGGAGGCTGTAGTTTCTAGTACTCCAGAAATT
CCTGAGCATTTAATTAACCTTTATCAATCTTTAGACTGGGTCGGACAAAATATTGATCAGCTTGTTTTACATCACTCTCA
GCCTGTTGCAGAACTCACCTCTTCACTGATGGAACTAGAACTACTTGGTTTATGTATGCAACAATCAGGATTGTATTTAC
GTTGTCGTTCTTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A009RR97

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii D1279779

91.512

100

0.915

  dprA Acinetobacter baumannii strain A118

90.981

100

0.91

  dprA Acinetobacter baylyi ADP1

71.391

100

0.721

  dprA Vibrio cholerae strain A1552

43.844

88.329

0.387


Multiple sequence alignment