Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LDO07_RS01055 Genome accession   NZ_AP024937
Coordinates   180500..181984 (+) Length   494 a.a.
NCBI ID   WP_011174141.1    Uniprot ID   Q72GR3
Organism   Thermus thermophilus strain AK1     
Function   promote branch migration; interact with DprA; integration of tDNA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 175500..186984
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDO07_RS01035 (TthAK1_01970) - 176491..177387 (+) 897 WP_223965865.1 DMT family transporter -
  LDO07_RS01040 (TthAK1_01980) - 177384..178196 (+) 813 WP_223965866.1 DMT family transporter -
  LDO07_RS01045 (TthAK1_01990) - 178198..179337 (+) 1140 WP_223965867.1 MFS transporter -
  LDO07_RS01050 (TthAK1_02000) - 179319..180380 (-) 1062 WP_223965868.1 Fic family protein -
  LDO07_RS01055 (TthAK1_02010) comM 180500..181984 (+) 1485 WP_011174141.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LDO07_RS01060 (TthAK1_02020) - 181981..183993 (-) 2013 WP_223965869.1 molybdopterin oxidoreductase family protein -
  LDO07_RS01065 (TthAK1_02030) - 183998..184261 (-) 264 Protein_201 carboxylesterase/lipase family protein -
  LDO07_RS01070 (TthAK1_02040) - 184331..184942 (+) 612 WP_223965870.1 ribonuclease HII -
  LDO07_RS01075 (TthAK1_02050) - 184982..185461 (+) 480 WP_143584382.1 DUF4384 domain-containing protein -
  LDO07_RS01080 (TthAK1_02060) - 185528..186607 (+) 1080 WP_143584385.1 TRAP transporter substrate-binding protein -

Sequence

Protein


Download         Length: 494 a.a.        Molecular weight: 52867.22 Da        Isoelectric Point: 8.4718

>NTDB_id=76000 LDO07_RS01055 WP_011174141.1 180500..181984(+) (comM) [Thermus thermophilus strain AK1]
MLAQVRSYALFGLDAVPVTVEVDVSPGLPSYALVGLPDKAVEESRERVRAALKNAGFPYPQARVVVNLAPAELRKEGSQF
DLPIALGLLAAQGVVPLEALSPFALAGELGLDGSLRPVPGAVNLALGALAEGKKLLLPLESAKEAALVEGVEVYGARSLQ
EAVAFLKGEEALAEARPEEAPEAVEALDLRDVKGQAKAKRALEIAAAGFHHLLMVGSPGSGKTMLARRLPFLLPPLSREE
ALEVTRIHSAAGKPVRGLVKAPPFRAPHHTVSYAGLIGGGAIPKPGEVSLAHRGVLFLDEFPEFSREALEALRQPLEDGV
VTVARARASLTFPARFLLVAAMNPCPCGWHGDPERPCTCTPAAQRRYAARISGPLLDRFDLVVEVPRLTPEELARAPEGE
GTEAVRERVLRARERMLARQGRPNGLLSGRALREHARLTPPAQALLQEAAKRMLLSARSYDRVLRVARTVADLLGEERVG
EAHVAEALAYRRAL

Nucleotide


Download         Length: 1485 bp        

>NTDB_id=76000 LDO07_RS01055 WP_011174141.1 180500..181984(+) (comM) [Thermus thermophilus strain AK1]
ATGCTGGCCCAGGTGCGAAGCTACGCCCTCTTCGGCCTGGACGCGGTTCCCGTCACCGTGGAGGTGGATGTTAGCCCGGG
GCTTCCCAGCTACGCCCTGGTGGGCCTGCCCGACAAGGCGGTGGAGGAAAGCCGGGAGCGCGTCCGGGCGGCCCTCAAGA
ACGCGGGCTTCCCCTACCCCCAGGCCCGGGTGGTGGTGAACCTGGCCCCGGCGGAGCTTCGGAAGGAGGGGAGCCAGTTT
GACCTTCCCATCGCCCTGGGCCTCCTCGCGGCCCAGGGGGTGGTGCCCCTCGAGGCCCTCTCCCCCTTCGCCCTCGCGGG
GGAGCTTGGCTTAGACGGGAGCCTGAGGCCCGTTCCCGGGGCGGTGAACCTGGCCCTGGGGGCCTTGGCCGAGGGGAAGA
AGCTCCTCCTGCCCCTGGAGAGCGCCAAGGAGGCGGCCTTGGTGGAGGGGGTGGAGGTCTACGGGGCGAGAAGCCTCCAG
GAAGCCGTGGCCTTCCTCAAGGGCGAGGAGGCCTTGGCCGAGGCCCGGCCCGAGGAGGCCCCGGAAGCGGTGGAGGCGCT
GGACCTCAGGGACGTCAAGGGCCAGGCCAAGGCCAAGCGCGCCCTGGAGATCGCCGCCGCGGGCTTCCACCACCTCCTCA
TGGTGGGAAGCCCGGGCTCAGGGAAGACCATGCTGGCGCGGCGGCTTCCCTTCCTCCTCCCACCCCTCTCCCGGGAGGAG
GCCTTGGAGGTGACCCGGATCCACTCCGCCGCGGGGAAGCCGGTGCGGGGGCTTGTGAAGGCCCCGCCCTTCCGCGCCCC
GCACCACACGGTGAGCTACGCCGGGCTCATCGGGGGTGGGGCCATCCCCAAGCCCGGGGAGGTCTCCTTGGCCCACCGGG
GGGTGCTCTTTCTGGACGAGTTCCCGGAGTTTTCCCGGGAGGCCCTCGAGGCCCTGCGCCAGCCCCTGGAGGACGGGGTG
GTGACCGTGGCCCGGGCCCGGGCAAGCCTCACCTTCCCCGCCCGCTTCCTCCTGGTGGCGGCCATGAACCCCTGCCCCTG
CGGCTGGCACGGGGACCCGGAAAGGCCTTGCACCTGCACCCCCGCCGCCCAGAGGCGCTACGCGGCCCGGATCTCCGGGC
CCCTCCTGGACCGGTTTGACCTGGTGGTGGAGGTGCCCCGCCTCACCCCCGAGGAGCTCGCCCGCGCCCCCGAGGGGGAG
GGCACGGAGGCGGTGCGGGAGCGGGTCCTAAGGGCCCGGGAGCGGATGCTCGCCCGCCAGGGGAGGCCCAACGGGCTCCT
CTCGGGGCGGGCCCTGAGGGAGCACGCCCGCCTCACCCCACCGGCCCAGGCCCTCCTCCAGGAGGCGGCCAAGCGGATGC
TCCTTTCGGCCCGGAGCTACGACCGCGTCCTCCGGGTGGCCCGCACCGTCGCCGACCTCCTGGGCGAGGAGAGGGTGGGG
GAGGCCCACGTGGCCGAGGCCCTGGCCTACCGCAGGGCCCTCTAG

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(188-392)

Subunit ChlI of Mg-chelatase (ChlI)

(20-139)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q72GR3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae O1 biovar El Tor strain E7946

48.583

100

0.486
  comM Vibrio cholerae strain A1552

48.583

100

0.486
  comM Haemophilus influenzae Rd KW20

47.39

100

0.478
  comM Acinetobacter baylyi ADP1

47.862

99.393

0.476
  comM Glaesserella parasuis strain SC1401

46.23

100

0.472
  comM Vibrio campbellii strain DS40M4

46.559

100

0.466
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.04

100

0.46
  comM Legionella pneumophila str. Paris

44.689

100

0.451
  comM Legionella pneumophila strain ERS1305867

44.689

100

0.451

Multiple sequence alignment