Detailed information    

insolico Bioinformatically predicted

Overview


Name   tsaP   Type   Machinery gene
Locus tag   H7R23_RS18585 Genome accession   NZ_AP021936
Coordinates   3874874..3876028 (+) Length   384 a.a.
NCBI ID   WP_032063700.1    Uniprot ID   A0A009QKW3
Organism   Acinetobacter pittii strain WP2-W18-ESBL-11     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 3869874..3881028
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7R23_RS18560 (WP2W18E11_36190) - 3870027..3871241 (+) 1215 WP_017482416.1 oxygenase MpaB family protein -
  H7R23_RS18565 (WP2W18E11_36200) - 3871309..3871515 (-) 207 WP_017387367.1 hypothetical protein -
  H7R23_RS18570 (WP2W18E11_36210) oprC 3871565..3873679 (-) 2115 WP_182917681.1 TonB-dependent copper receptor -
  H7R23_RS18575 (WP2W18E11_36220) - 3873752..3874177 (-) 426 WP_005804747.1 DUF2946 family protein -
  H7R23_RS18580 (WP2W18E11_36230) def 3874221..3874751 (-) 531 WP_002114101.1 peptide deformylase -
  H7R23_RS18585 (WP2W18E11_36240) tsaP 3874874..3876028 (+) 1155 WP_032063700.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  H7R23_RS18590 (WP2W18E11_36250) dprA 3876049..3877182 (+) 1134 WP_032063701.1 DNA-processing protein DprA Machinery gene
  H7R23_RS18595 (WP2W18E11_36260) yrdC 3877234..3877803 (+) 570 WP_005804750.1 L-threonylcarbamoyladenylate synthase -
  H7R23_RS18600 (WP2W18E11_36270) - 3878195..3879115 (-) 921 WP_182917682.1 DMT family transporter -
  H7R23_RS18605 (WP2W18E11_36280) - 3879219..3879872 (-) 654 WP_079377716.1 TetR/AcrR family transcriptional regulator -

Sequence


Protein


Download         Length: 384 a.a.        Molecular weight: 42687.62 Da        Isoelectric Point: 7.2973

>NTDB_id=76000 H7R23_RS18585 WP_032063700.1 3874874..3876028(+) (tsaP) [Acinetobacter pittii strain WP2-W18-ESBL-11]
MKKVFDGMVQFHALGIKKHLLALALFTGVAFSTVAETYAASPNHNPPSLKSNAPHVYVVKRGDTLWDISGHFLSKPWRWP
EIWANNQHVKNPHWIYPGDRLLLCSLDGRPLIGKDEGDGCVGIIRRYTGQMTNLQPQVRVESLNNNVPVIPLEHIKQWLE
HSTILPIDAIQHTPYVVGTADQRVLAAKGQTIYARGQGLIDGQRYAVYREGEPYYFTDNKGKKHSLGIELQQVASGIAIS
SEKDITTLELTDSYNSEVRRGDRVMPEEEATLPTLFYPVDATQVTDGGKIIRVMGSIGTAAKNSVVTLDRGMAQGIQVGQ
VFDITQQGETIRDPKTKEPIQLPGQQIGSLMVFRTFDQLSYAYVLESDLPVKVGSSIQPPRYND

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=76000 H7R23_RS18585 WP_032063700.1 3874874..3876028(+) (tsaP) [Acinetobacter pittii strain WP2-W18-ESBL-11]
ATGAAAAAGGTTTTTGACGGCATGGTTCAATTTCATGCTTTGGGGATAAAAAAGCATTTACTTGCTTTGGCACTTTTTAC
AGGGGTTGCATTCAGTACGGTAGCAGAGACTTATGCTGCTAGTCCGAACCATAATCCACCCTCTCTTAAAAGTAATGCAC
CACATGTCTACGTTGTAAAACGAGGAGATACGCTATGGGATATTTCCGGTCATTTTCTGAGTAAACCTTGGCGCTGGCCT
GAAATTTGGGCAAACAATCAGCATGTCAAAAATCCACACTGGATTTATCCTGGTGATCGATTACTGCTGTGTAGTTTAGA
TGGCCGCCCATTGATCGGTAAAGATGAGGGAGATGGCTGTGTCGGCATTATTCGCCGTTACACAGGTCAAATGACAAATT
TACAACCTCAAGTTCGTGTGGAGTCACTTAACAATAACGTACCTGTTATTCCTCTTGAACATATCAAACAGTGGTTAGAA
CACAGCACTATTCTACCTATCGATGCAATTCAACACACTCCTTATGTAGTCGGTACTGCCGATCAACGTGTACTGGCGGC
AAAAGGCCAGACTATTTATGCGCGCGGACAAGGTTTAATTGATGGTCAACGTTATGCAGTTTATCGTGAAGGTGAACCTT
ATTATTTCACAGATAATAAAGGCAAAAAACACAGTCTAGGTATTGAGTTACAACAAGTTGCCTCAGGGATCGCGATCTCT
TCTGAAAAAGACATTACCACGCTTGAGTTAACTGATAGCTACAATTCTGAAGTACGTCGTGGTGATCGGGTAATGCCAGA
AGAAGAAGCAACATTGCCTACTTTATTTTATCCAGTAGATGCCACTCAGGTGACCGATGGCGGCAAAATTATTCGTGTAA
TGGGATCAATTGGTACTGCTGCCAAAAATAGTGTAGTGACTTTAGATCGAGGTATGGCACAAGGTATTCAAGTAGGACAA
GTTTTTGATATTACGCAACAAGGTGAAACCATTCGAGATCCTAAAACCAAAGAACCAATACAGTTACCAGGACAACAAAT
TGGTAGTCTGATGGTCTTTAGAACTTTTGATCAGTTGAGTTATGCCTACGTATTAGAAAGCGATTTACCAGTTAAAGTTG
GTTCAAGCATTCAGCCACCCCGCTATAATGATTAA

Domains


Predicted by InterproScan.

(57-102)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A009QKW3

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

89.583

100

0.896


Multiple sequence alignment