Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   OSV60_RS17455 Genome accession   NZ_CP113077
Coordinates   3701856..3703343 (+) Length   495 a.a.
NCBI ID   WP_098714214.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 86II/2C     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3696856..3708343
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OSV60_RS17430 (OSV60_17430) ribD 3697772..3698857 (-) 1086 WP_098714212.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  OSV60_RS17435 (OSV60_17435) nrdR 3698873..3699331 (-) 459 WP_000543541.1 transcriptional regulator NrdR -
  OSV60_RS17440 (OSV60_17440) - 3699490..3700887 (-) 1398 WP_000738520.1 ammonium transporter -
  OSV60_RS17445 (OSV60_17445) glnK 3700945..3701283 (-) 339 WP_098714213.1 P-II family nitrogen regulator -
  OSV60_RS17450 (OSV60_17450) - 3701563..3701790 (+) 228 WP_000894500.1 accessory factor UbiK family protein -
  OSV60_RS17455 (OSV60_17455) comM 3701856..3703343 (+) 1488 WP_098714214.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  OSV60_RS17460 (OSV60_17460) - 3703358..3704791 (-) 1434 WP_000945958.1 PLP-dependent aminotransferase family protein -
  OSV60_RS17465 (OSV60_17465) - 3704903..3705679 (+) 777 WP_098714215.1 aldolase -
  OSV60_RS17470 (OSV60_17470) - 3705695..3706573 (+) 879 WP_000772970.1 dihydrodipicolinate synthase family protein -
  OSV60_RS17475 (OSV60_17475) - 3706616..3707428 (-) 813 WP_000975212.1 TorF family putative porin -
  OSV60_RS17480 (OSV60_17480) - 3707485..3707655 (-) 171 WP_000492275.1 hypothetical protein -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54497.38 Da        Isoelectric Point: 7.2753

>NTDB_id=759984 OSV60_RS17455 WP_098714214.1 3701856..3703343(+) (comM) [Acinetobacter baumannii strain 86II/2C]
MSFSKIYTRGILGLHAPLIEVEVHVSQGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR
LDLPIALGILIASGQLPENCTEDFEFIGELALDGHVRPVSGALTLAMACQQAQHKIVLPVDNSQDISHLPNLECYPVNHL
KEVCEHFLGTQKLAHAQPSAHSNEMPYKFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLPSILPPLST
QETLEVASIYSISNTPHTFGQRPFRAPHHTASAIALVGGGSHPKPGEITLSHLGVLFLDELPEFDRKVLEVLRQPLESKE
IIISRAARQITYPANFQLIAAMNPCPCGYAFNQDSRCQCSPESIKRYQNRISGPLLDRIDLHIDVPPLKAQELQDPTPAE
DSTTVRQRVIYAYEQQMQRQDCLNQALSPKQLEQHAVLDSTSQRMIEMAQQRLNLSARAYHRVLRVARTIADLAQSEVIQ
SPHLTEALSYRGNHS

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=759984 OSV60_RS17455 WP_098714214.1 3701856..3703343(+) (comM) [Acinetobacter baumannii strain 86II/2C]
ATGTCTTTTTCTAAAATTTATACTCGGGGAATTTTAGGATTACATGCGCCTCTCATTGAGGTTGAGGTGCATGTGAGTCA
AGGCTTACCCTCTCTGACTATTGTAGGCTTAGCGGAAGCAGCAGTTAGGGAAAGTAAGGATAGGGTTCGCTCAGCTATTA
TTAACAGTGGATTTCAATTTCCAACTAAGCGGCTGACCATTAACCTTGCTCCTGCAGATTTGCCCAAAGATGGTTCACGG
CTAGATTTACCAATTGCTTTAGGCATCTTAATTGCCTCTGGTCAACTTCCGGAAAACTGCACAGAAGACTTTGAATTTAT
TGGAGAGTTAGCTCTAGACGGTCATGTAAGACCTGTGTCAGGCGCCTTAACTTTAGCAATGGCATGCCAGCAAGCTCAGC
ATAAAATCGTTTTACCCGTCGATAATAGCCAAGATATTAGCCATTTACCTAATCTTGAGTGTTATCCGGTTAATCATTTA
AAAGAGGTGTGCGAGCACTTTTTAGGCACACAAAAGCTAGCTCATGCGCAGCCAAGTGCCCATTCAAATGAAATGCCCTA
TAAATTTGATCTTGCAGATGTTAAAGGTCAGCTACGCCCACGGCGTGCACTAGAAATTGCTGCCGCTGGAGGACATTCCC
TGCTCTTTAAAGGACCACCAGGCACAGGTAAAACTTTATTGGCCTCACGCCTGCCTTCCATTTTACCGCCACTTTCTACT
CAAGAAACTCTTGAAGTTGCAAGTATTTATTCTATTTCAAATACACCACATACTTTTGGGCAGCGTCCATTTCGCGCGCC
CCACCATACAGCATCAGCAATTGCACTGGTTGGGGGCGGTTCACACCCTAAACCAGGTGAAATTACTTTATCTCATTTAG
GTGTTCTATTTTTAGATGAACTTCCCGAGTTTGACAGAAAGGTTCTAGAAGTCTTACGCCAACCGCTTGAGTCAAAAGAA
ATCATTATTTCACGTGCAGCTCGGCAAATTACTTATCCTGCGAACTTTCAGCTCATTGCAGCAATGAATCCTTGTCCATG
TGGGTATGCATTTAATCAAGATAGCCGTTGTCAGTGTTCTCCAGAAAGCATTAAGCGCTATCAAAACCGTATATCGGGAC
CGTTACTCGATCGTATCGATTTACATATTGATGTACCGCCATTAAAAGCTCAAGAACTGCAAGACCCAACACCTGCAGAA
GATTCTACCACTGTACGACAACGTGTGATTTATGCTTATGAACAACAAATGCAAAGACAGGATTGTTTGAATCAGGCGCT
CTCACCCAAACAACTGGAACAACATGCTGTTCTCGATAGTACTTCACAGCGAATGATTGAAATGGCTCAGCAACGTTTAA
ATTTATCTGCTCGTGCTTATCATCGTGTTTTACGGGTTGCTCGTACTATTGCCGATTTGGCCCAAAGTGAGGTCATTCAA
AGTCCTCATCTTACAGAAGCACTCTCTTATCGAGGTAATCACTCTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

51.21

100

0.513
  comM Glaesserella parasuis strain SC1401

50.301

100

0.507
  comM Haemophilus influenzae Rd KW20

49.499

100

0.499
  comM Legionella pneumophila strain ERS1305867

49.197

100

0.495
  comM Legionella pneumophila str. Paris

49.197

100

0.495
  comM Vibrio campbellii strain DS40M4

48.485

100

0.485
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.8

100

0.473