Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   P7I81_RS09165 Genome accession   NZ_CP124648
Coordinates   1937600..1938223 (-) Length   207 a.a.
NCBI ID   WP_003103268.1    Uniprot ID   G3XD51
Organism   Pseudomonas aeruginosa strain 2020CK-00220     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1932600..1943223
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P7I81_RS09145 (P7I81_09145) aroB 1933195..1934301 (-) 1107 WP_003112148.1 3-dehydroquinate synthase -
  P7I81_RS09150 (P7I81_09150) aroK 1934351..1934869 (-) 519 WP_003095833.1 shikimate kinase AroK -
  P7I81_RS09155 (P7I81_09155) pilQ 1934881..1937025 (-) 2145 WP_003095835.1 type 4a pilus secretin PilQ Machinery gene
  P7I81_RS09160 (P7I81_09160) comL/pilP 1937079..1937603 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  P7I81_RS09165 (P7I81_09165) pilO 1937600..1938223 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  P7I81_RS09170 (P7I81_09170) pilN 1938220..1938816 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  P7I81_RS09175 (P7I81_09175) pilM 1938816..1939880 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  P7I81_RS09180 (P7I81_09180) - 1940065..1942536 (+) 2472 WP_003095841.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 22819.26 Da        Isoelectric Point: 4.7787

>NTDB_id=759448 P7I81_RS09165 WP_003103268.1 1937600..1938223(-) (pilO) [Pseudomonas aeruginosa strain 2020CK-00220]
MSLASSLESLRKIDINDLDLNNIGSWPAAVKVIVCVLLTAAVLALGYNFHLSDMQAQLEQQAAEEETLKQQFSTKAFQAA
NLEAYKAQMKEMEESFGALLRQLPSDTEVPGLLEDITRTGLGSGLEFEEIKLLPEVAQQFYIELPIQISVVGGYHDLATF
VSGVSSLPRIVTLHDFEIKPVAPGSTSKLRMSILAKTYRYNDKGLKK

Nucleotide


Download         Length: 624 bp        

>NTDB_id=759448 P7I81_RS09165 WP_003103268.1 1937600..1938223(-) (pilO) [Pseudomonas aeruginosa strain 2020CK-00220]
ATGAGTCTGGCCAGTTCCCTGGAAAGTCTGCGCAAGATCGATATCAACGATCTCGACCTGAACAACATCGGTTCCTGGCC
GGCGGCGGTCAAGGTCATCGTCTGCGTGCTGCTGACCGCGGCGGTCCTGGCGCTGGGCTACAACTTCCATCTGAGCGACA
TGCAGGCTCAGCTCGAACAGCAGGCCGCGGAAGAGGAGACGCTCAAGCAGCAGTTCTCCACCAAGGCCTTCCAGGCCGCG
AACCTGGAAGCCTACAAGGCACAGATGAAGGAGATGGAAGAGTCCTTCGGCGCCTTGCTGCGGCAGTTGCCCAGCGACAC
CGAGGTACCCGGGCTGCTCGAGGACATCACTCGTACCGGCCTGGGCAGCGGCCTTGAGTTCGAGGAAATCAAGCTGCTTC
CCGAGGTTGCCCAGCAGTTCTATATCGAGCTGCCGATCCAGATCAGCGTGGTCGGCGGCTACCACGACCTGGCGACCTTC
GTCAGCGGCGTGTCCAGCCTGCCGCGGATCGTCACCCTGCATGACTTCGAGATCAAGCCGGTCGCGCCCGGCAGCACGTC
CAAGCTGCGCATGAGCATCCTGGCCAAGACCTATCGCTACAACGACAAGGGGCTGAAGAAATGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilO (PilO)

(58-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G3XD51

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Legionella pneumophila strain ERS1305867

46.114

93.237

0.43
  pilO Acinetobacter baumannii D1279779

43.979

92.271

0.406
  comO/pilO Acinetobacter baylyi ADP1

43.455

92.271

0.401