Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   P7I81_RS09160 Genome accession   NZ_CP124648
Coordinates   1937079..1937603 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain 2020CK-00220     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1932079..1942603
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P7I81_RS09145 (P7I81_09145) aroB 1933195..1934301 (-) 1107 WP_003112148.1 3-dehydroquinate synthase -
  P7I81_RS09150 (P7I81_09150) aroK 1934351..1934869 (-) 519 WP_003095833.1 shikimate kinase AroK -
  P7I81_RS09155 (P7I81_09155) pilQ 1934881..1937025 (-) 2145 WP_003095835.1 type 4a pilus secretin PilQ Machinery gene
  P7I81_RS09160 (P7I81_09160) comL/pilP 1937079..1937603 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  P7I81_RS09165 (P7I81_09165) pilO 1937600..1938223 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  P7I81_RS09170 (P7I81_09170) pilN 1938220..1938816 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  P7I81_RS09175 (P7I81_09175) pilM 1938816..1939880 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  P7I81_RS09180 (P7I81_09180) - 1940065..1942536 (+) 2472 WP_003095841.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=759447 P7I81_RS09160 WP_003095836.1 1937079..1937603(-) (comL/pilP) [Pseudomonas aeruginosa strain 2020CK-00220]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=759447 P7I81_RS09160 WP_003095836.1 1937079..1937603(-) (comL/pilP) [Pseudomonas aeruginosa strain 2020CK-00220]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGACCCAAGGGTACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGATGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362