Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   H7R60_RS14475 Genome accession   NZ_AP021927
Coordinates   3123704..3125221 (-) Length   505 a.a.
NCBI ID   WP_052815775.1    Uniprot ID   A0A2L0TRT9
Organism   Aeromonas caviae strain WP2-W18-ESBL-01     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3118704..3130221
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7R60_RS14450 (WP2W18E01_27680) - 3119840..3120475 (-) 636 WP_069652407.1 nicotinamidase -
  H7R60_RS14455 (WP2W18E01_27690) - 3120550..3121200 (+) 651 WP_029314880.1 NUDIX hydrolase -
  H7R60_RS14460 (WP2W18E01_27700) - 3121277..3121762 (+) 486 WP_103255145.1 DUF523 domain-containing protein -
  H7R60_RS14465 (WP2W18E01_27710) - 3121708..3122664 (-) 957 WP_182935064.1 acyltransferase -
  H7R60_RS14470 (WP2W18E01_27720) - 3122672..3123571 (-) 900 WP_103858218.1 acyltransferase -
  H7R60_RS14475 (WP2W18E01_27730) comM 3123704..3125221 (-) 1518 WP_052815775.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  H7R60_RS14480 (WP2W18E01_27740) ilvG 3125606..3127252 (+) 1647 WP_182935065.1 acetolactate synthase 2 catalytic subunit -
  H7R60_RS14485 (WP2W18E01_27750) ilvM 3127249..3127506 (+) 258 WP_010676086.1 acetolactate synthase 2 small subunit -
  H7R60_RS14490 (WP2W18E01_27760) - 3127519..3128463 (+) 945 WP_039039680.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 505 a.a.        Molecular weight: 54674.58 Da        Isoelectric Point: 7.4701

>NTDB_id=75881 H7R60_RS14475 WP_052815775.1 3123704..3125221(-) (comM) [Aeromonas caviae strain WP2-W18-ESBL-01]
MSLAVVYSRASLGIAAPQVTVEVHLSNGLPAFNMVGLPETSVKESRDRVRSALLNGNFEFPAKHITVNLAPADLPKEGGR
FDLAIAIGILAASKQIPAKYLLDHEFLGELALTGEIRPVLGVLPSVLACRDAGRTLLVPRENGPEASLIQDAEVRTAHQL
LAVTAWLAGQYELPLPEPQSAETLPDVPDLQDVIGQSQAKRALEIAAAGSHNLLFIGPPGTGKSMLASRLPGILPPLSEQ
EAQQTAAIHSIGGLTPRAGHWHHRPYRTPHHSASAVALVGGGTHPRPGEISLAHNGVLFLDELPEFERKVLDSLREPLET
GHITISRAARQVDFPARFQLVGAMNPSPCGHYGDGQTRSSPDQILRYLGKLSGPFLDRFDLTVEVPLLPRGSLTGKAERG
ESSQQIRERVLGARERMLSRSGKLNNLLDSREIEDVCRLSPQDAEFLEGAIQKLGLSIRAWHRILRVSRTIADLAGHATI
ERAHLIEALGYRAMDRLLSRLRGGQ

Nucleotide


Download         Length: 1518 bp        

>NTDB_id=75881 H7R60_RS14475 WP_052815775.1 3123704..3125221(-) (comM) [Aeromonas caviae strain WP2-W18-ESBL-01]
ATGTCATTAGCTGTTGTTTATAGCCGTGCCAGCCTGGGGATAGCGGCGCCGCAAGTCACGGTGGAAGTGCACCTCTCCAA
CGGCCTGCCCGCCTTCAACATGGTGGGGTTGCCGGAAACCTCGGTGAAAGAGTCGCGGGATCGGGTGCGCAGCGCCCTGC
TCAACGGCAATTTCGAATTTCCGGCCAAGCACATCACGGTCAACCTGGCCCCTGCGGATCTGCCCAAAGAGGGGGGCCGC
TTCGACCTGGCCATCGCCATCGGCATTCTCGCCGCATCCAAGCAGATACCCGCAAAATACCTGCTCGATCACGAATTTTT
AGGGGAGTTGGCCCTGACGGGCGAGATCCGCCCCGTGCTTGGGGTGCTCCCCTCGGTGCTCGCCTGCCGCGACGCAGGGC
GCACCCTGCTGGTCCCACGGGAGAACGGTCCGGAGGCTTCCCTCATACAGGATGCCGAGGTGCGCACCGCCCACCAGCTG
CTGGCGGTCACCGCCTGGCTGGCGGGCCAGTACGAACTGCCGCTGCCGGAACCCCAGAGCGCGGAGACCCTGCCCGACGT
GCCGGATCTGCAGGATGTGATCGGTCAGTCCCAGGCGAAGCGGGCGCTGGAGATCGCCGCAGCTGGCAGCCACAACCTGC
TGTTCATCGGCCCCCCCGGCACCGGCAAGAGCATGTTGGCCAGCCGTCTGCCCGGCATTCTGCCACCGCTGAGCGAACAG
GAGGCGCAGCAGACCGCCGCCATCCACTCCATCGGCGGCCTCACCCCCCGCGCCGGCCACTGGCACCACAGGCCGTATCG
CACGCCCCATCACAGCGCCTCGGCAGTGGCGCTGGTGGGCGGGGGTACCCATCCCAGGCCTGGCGAAATTTCCCTCGCCC
ACAACGGGGTACTGTTTCTGGATGAACTGCCGGAGTTCGAGCGCAAGGTGCTCGACTCCCTGCGCGAGCCGCTGGAGACC
GGGCACATCACCATCAGTCGTGCCGCCCGCCAGGTGGATTTTCCCGCCCGCTTCCAACTGGTGGGTGCCATGAATCCCAG
CCCCTGCGGCCATTATGGCGACGGCCAGACCCGCTCCAGCCCGGATCAGATCCTGCGCTATCTGGGCAAGCTCTCCGGCC
CCTTTCTCGATCGGTTCGATCTGACGGTAGAGGTCCCGCTCTTGCCCAGGGGGAGCCTGACCGGCAAGGCGGAGCGGGGG
GAATCGAGCCAGCAGATACGCGAACGGGTGCTGGGGGCGCGAGAGCGCATGCTGAGTCGCAGCGGAAAACTCAACAACCT
GCTGGATAGTCGTGAAATCGAAGATGTTTGCAGATTATCGCCACAGGATGCCGAGTTTCTGGAGGGTGCCATCCAGAAGC
TGGGGCTCAGCATCCGGGCCTGGCACCGCATCCTGCGGGTATCGCGCACCATCGCCGATCTGGCGGGGCACGCCACCATC
GAGAGAGCGCATCTGATCGAAGCCCTGGGCTATCGTGCCATGGATAGGCTGTTGTCGCGGCTGCGCGGGGGCCAGTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2L0TRT9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

63.944

99.406

0.636
  comM Haemophilus influenzae Rd KW20

61.858

100

0.62
  comM Vibrio campbellii strain DS40M4

62.151

99.406

0.618
  comM Glaesserella parasuis strain SC1401

60.827

100

0.612
  comM Legionella pneumophila str. Paris

50.992

99.802

0.509
  comM Legionella pneumophila strain ERS1305867

50.992

99.802

0.509
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.972

100

0.463

Multiple sequence alignment