Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   OSC48_RS25990 Genome accession   NZ_CP112867
Coordinates   5618233..5619729 (+) Length   498 a.a.
NCBI ID   WP_266247432.1    Uniprot ID   -
Organism   Pseudomonas quebecensis isolate S1Bt7     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5613233..5624729
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OSC48_RS25960 (OSC48_25960) - 5613751..5614446 (+) 696 WP_266247431.1 HAD-IA family hydrolase -
  OSC48_RS25965 (OSC48_25965) sutA 5614602..5614937 (-) 336 WP_181076313.1 transcriptional regulator SutA -
  OSC48_RS25970 (OSC48_25970) - 5615039..5615464 (-) 426 WP_181076312.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  OSC48_RS25975 (OSC48_25975) - 5615676..5617013 (-) 1338 WP_181076311.1 ammonium transporter -
  OSC48_RS25980 (OSC48_25980) glnK 5617048..5617386 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  OSC48_RS25985 (OSC48_25985) - 5617806..5618066 (+) 261 WP_034101453.1 accessory factor UbiK family protein -
  OSC48_RS25990 (OSC48_25990) comM 5618233..5619729 (+) 1497 WP_266247432.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  OSC48_RS25995 (OSC48_25995) - 5619754..5621730 (-) 1977 WP_266247434.1 methyl-accepting chemotaxis protein -
  OSC48_RS26000 (OSC48_26000) - 5621908..5622828 (-) 921 WP_266247436.1 LysR substrate-binding domain-containing protein -
  OSC48_RS26005 (OSC48_26005) - 5622982..5624385 (+) 1404 WP_266247550.1 NorM family multidrug efflux MATE transporter -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 53378.55 Da        Isoelectric Point: 7.5542

>NTDB_id=758491 OSC48_RS25990 WP_266247432.1 5618233..5619729(+) (comM) [Pseudomonas quebecensis isolate S1Bt7]
MSLAIVHSRAQIGVEAPAVTVEVHMANGLPSLTLVGLPETAVKESKDRVRSAILNSALQYPARRITLNLAPADLPKDGGR
FDLAIALGILAASVQVPTLMLDDVECLGELALSGEVRAVKGVLPAALAARKAGRTVIVPRANAEEACLASGLKVIAVDHL
LQVVAHLNGHVPIEPYTSDGLLYLSKPYPDLSEVQGQMTAKRALLIAAAGAHNLLLSGPPGTGKTLLASRLPGLLPPLSE
QEALEVAAIQSVVSLAPLSHWPHRPFRQPHHSASGPALVGGGSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GHIVISRARDRVSFPARFQLVAAMNPCPCGYLGDPTGRCRCTPEQIQRYRNKLSGPLLDRIDLHLTVARETTALNPTQAP
GDNTATAAAQVADARERQEKRQGCANAFLDLPGLREHCRLAKADESWLEHACERLTLSLRAAHRLLKVARTLADLEQAEA
ITREHLQEALQYRPAAVT

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=758491 OSC48_RS25990 WP_266247432.1 5618233..5619729(+) (comM) [Pseudomonas quebecensis isolate S1Bt7]
ATGTCACTGGCCATCGTCCACAGCCGCGCCCAAATCGGTGTCGAAGCCCCCGCCGTCACCGTCGAAGTGCACATGGCCAA
CGGCCTGCCGTCCCTGACGCTGGTGGGCTTGCCCGAAACCGCAGTCAAAGAAAGCAAGGACCGCGTGCGCAGCGCCATTC
TCAACTCCGCGCTGCAATACCCGGCCCGTCGCATCACCCTCAACCTCGCGCCCGCCGACCTGCCCAAGGATGGCGGGCGT
TTTGATCTGGCGATTGCCCTAGGCATCCTGGCCGCGAGTGTGCAGGTGCCGACGTTGATGCTCGACGACGTGGAATGCCT
GGGCGAATTGGCGCTGTCCGGCGAGGTACGCGCCGTCAAAGGCGTGTTGCCGGCGGCGCTGGCTGCGCGCAAGGCCGGGC
GCACTGTGATAGTGCCGCGCGCGAATGCGGAGGAAGCATGCCTGGCATCGGGCTTGAAAGTGATTGCAGTGGATCACTTG
CTGCAGGTCGTGGCGCACCTCAATGGGCACGTGCCGATTGAGCCCTACACATCCGACGGTTTGCTGTACCTGAGCAAACC
GTACCCGGACCTGAGCGAAGTGCAGGGCCAGATGACGGCCAAGCGGGCATTGCTGATCGCCGCGGCCGGCGCACACAACC
TGCTGCTGAGCGGCCCGCCGGGCACCGGCAAGACCTTGCTCGCCAGCCGCCTGCCCGGCCTGCTGCCGCCCCTGAGTGAG
CAGGAAGCCTTGGAAGTCGCTGCGATCCAGTCGGTGGTCAGCCTGGCGCCGTTGAGCCACTGGCCCCATCGACCGTTTCG
CCAACCGCACCACTCAGCCTCCGGGCCGGCCTTGGTGGGCGGCGGCTCAAAACCCCAGCCGGGGGAAATTACCCTGGCGC
ATCACGGCGTGTTGTTTCTGGATGAACTGCCGGAATTTGATCGCAAGGTGCTGGAGGTTTTGCGTGAGCCGCTGGAGTCA
GGGCATATCGTGATTTCCCGCGCGCGCGACCGAGTGAGCTTCCCGGCGCGCTTTCAACTGGTCGCAGCGATGAATCCCTG
CCCCTGTGGGTATCTGGGCGATCCTACCGGCCGTTGTCGCTGTACGCCGGAGCAGATCCAGCGCTATCGCAACAAACTGT
CCGGGCCGCTGCTGGACCGGATCGATCTGCACCTGACGGTCGCGCGTGAAACCACGGCGCTGAACCCCACCCAAGCGCCC
GGCGATAACACCGCGACGGCGGCCGCACAGGTTGCCGACGCTCGAGAACGGCAGGAAAAACGCCAGGGCTGCGCCAACGC
GTTTCTGGATCTGCCAGGGCTGCGTGAGCATTGCAGGCTGGCGAAGGCCGATGAAAGCTGGCTGGAACATGCCTGCGAGC
GGCTGACACTGTCCTTGCGCGCGGCTCACCGGCTGCTCAAGGTCGCCCGTACCTTGGCCGACCTGGAGCAGGCAGAGGCG
ATCACTCGCGAGCATCTGCAGGAGGCACTGCAATACCGCCCTGCGGCGGTCACTTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

55.96

99.398

0.556
  comM Vibrio cholerae strain A1552

55.758

99.398

0.554
  comM Glaesserella parasuis strain SC1401

54.89

100

0.552
  comM Haemophilus influenzae Rd KW20

54.2

100

0.544
  comM Legionella pneumophila str. Paris

51.008

99.598

0.508
  comM Legionella pneumophila strain ERS1305867

51.008

99.598

0.508
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.924

100

0.464