Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ORT68_RS03840 Genome accession   NZ_CP111111
Coordinates   828688..829083 (+) Length   131 a.a.
NCBI ID   WP_001829977.1    Uniprot ID   A0A4Q9W3V8
Organism   Staphylococcus epidermidis strain KCTC 13172     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 823688..834083
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ORT68_RS03815 (ORT68_03815) - 825107..825511 (+) 405 WP_001829924.1 F0F1 ATP synthase subunit epsilon -
  ORT68_RS03820 (ORT68_03820) - 825660..825893 (+) 234 WP_002456242.1 DUF1146 family protein -
  ORT68_RS03825 (ORT68_03825) murA 826003..827268 (+) 1266 WP_001829978.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  ORT68_RS03830 (ORT68_03830) fabZ 827302..827739 (+) 438 WP_001829953.1 3-hydroxyacyl-ACP dehydratase FabZ -
  ORT68_RS03835 (ORT68_03835) - 828057..828497 (-) 441 WP_001829935.1 YwpF-like family protein -
  ORT68_RS03840 (ORT68_03840) ssb 828688..829083 (+) 396 WP_001829977.1 single-stranded DNA-binding protein Machinery gene
  ORT68_RS03845 (ORT68_03845) - 829471..830130 (+) 660 WP_001829904.1 transglycosylase family protein -
  ORT68_RS03850 (ORT68_03850) tenA 830415..831104 (+) 690 WP_266196341.1 thiaminase II -
  ORT68_RS03855 (ORT68_03855) thiD 831097..831918 (+) 822 WP_001832736.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  ORT68_RS03860 (ORT68_03860) thiM 831911..832699 (+) 789 WP_001829971.1 hydroxyethylthiazole kinase -
  ORT68_RS03865 (ORT68_03865) thiE 832705..833343 (+) 639 WP_002505076.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15158.08 Da        Isoelectric Point: 5.2661

>NTDB_id=757912 ORT68_RS03840 WP_001829977.1 828688..829083(+) (ssb) [Staphylococcus epidermidis strain KCTC 13172]
MLNKIVIVGRMTKDAQIYEKEDNKIATFCVATERNYKDDINEISTDYLLCKAFGKTATNIEKYTSQGTLVGITGQMRSRK
YEKEGQTHFVTELYVETIKFMSPKNKNNETPSDNQFENNTYQPDDLEIIHI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=757912 ORT68_RS03840 WP_001829977.1 828688..829083(+) (ssb) [Staphylococcus epidermidis strain KCTC 13172]
ATGTTAAATAAAATAGTCATTGTTGGTAGAATGACGAAAGATGCTCAAATCTATGAAAAGGAGGATAACAAAATAGCAAC
ATTTTGCGTTGCTACAGAAAGAAACTACAAAGATGATATTAATGAAATTTCTACAGATTATTTACTTTGTAAAGCTTTCG
GTAAAACTGCCACTAATATTGAAAAGTACACTAGTCAAGGTACTTTAGTAGGTATAACTGGACAAATGCGTTCAAGAAAA
TATGAAAAAGAAGGCCAAACACATTTTGTTACAGAATTATACGTTGAAACAATAAAATTCATGTCCCCAAAAAATAAAAA
CAATGAAACTCCCTCTGATAATCAATTTGAAAACAACACTTATCAACCTGATGATTTAGAAATAATTCATATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Q9W3V8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

73.282

100

0.733
  ssb Staphylococcus aureus MW2

72.519

100

0.725