Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   PHLH3_RS00960 Genome accession   NZ_AP021905
Coordinates   196025..197521 (-) Length   498 a.a.
NCBI ID   WP_213627636.1    Uniprot ID   -
Organism   Pseudomonas sp. Pc102     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 191025..202521
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PHLH3_RS00945 (PHLH8_01910) - 192007..192927 (+) 921 WP_173178530.1 LysR substrate-binding domain-containing protein -
  PHLH3_RS00950 (PHLH8_01920) - 193078..195054 (+) 1977 WP_213627631.1 methyl-accepting chemotaxis protein -
  PHLH3_RS00955 (PHLH8_01930) - 195128..195934 (-) 807 WP_213627633.1 TlpA disulfide reductase family protein -
  PHLH3_RS00960 (PHLH8_01940) comM 196025..197521 (-) 1497 WP_213627636.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  PHLH3_RS00965 (PHLH8_01950) - 197556..197819 (-) 264 WP_213627638.1 accessory factor UbiK family protein -
  PHLH3_RS00970 (PHLH8_01960) glnK 198229..198567 (+) 339 WP_003457590.1 P-II family nitrogen regulator -
  PHLH3_RS00975 (PHLH8_01970) - 198602..199921 (+) 1320 WP_111261183.1 ammonium transporter -
  PHLH3_RS00980 (PHLH8_01980) - 200130..200603 (+) 474 WP_213627640.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  PHLH3_RS00985 (PHLH8_01990) sutA 200632..200955 (+) 324 WP_111261181.1 transcriptional regulator SutA -
  PHLH3_RS00990 (PHLH8_02000) - 201015..201719 (-) 705 WP_213627642.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 52900.69 Da        Isoelectric Point: 6.7744

>NTDB_id=75736 PHLH3_RS00960 WP_213627636.1 196025..197521(-) (comM) [Pseudomonas sp. Pc102]
MSLALVHSRAQVGVEAPAVTVEAHLTNGLPSLALVGLPETAVKESKDRVRSAILTSGFEFPLRRITLNLAPADLPKDGGR
FDLAVALGILAASGQVPASSLEMLECLGELALSGAVRPVQGVLPAALAARTAGRTLVVPRENAEEASLASGLRVIAIGHL
LELAAHLNGQAPLEPFVSAGLPDQAASYPDLIEVQGQVAAKRALLVAAAGAHNLLLSGPPGTGKTLLASRLPGLLPPLQE
QEALEVAAIHSVASHAPLDAWPLRPFRQPHHSASGPALVGGGSKPRPGEITLAHQGVLFLDELPEFDRKVLEVLREPLES
GEIVIARANDRVRFPARFQLVAAMNPCPCGYLGDSANRCRCTPEQIQRYRAKLSGPLLDRIDLHLTVAREATSLDDPLPG
GQDSASAAAEVARARQRQLDRQGCANAFLDLQGLRRHCPLPEEDRRWLEGACERLGLSLRAAHRIIKVARTLADLEDTEA
VARHHLAEALQYRPSSEP

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=75736 PHLH3_RS00960 WP_213627636.1 196025..197521(-) (comM) [Pseudomonas sp. Pc102]
ATGTCCCTGGCCCTCGTCCACAGCCGCGCCCAGGTGGGCGTGGAAGCGCCGGCCGTCACGGTCGAGGCGCACCTGACCAA
CGGCCTGCCCTCGCTGGCCCTGGTCGGCCTGCCGGAGACGGCGGTGAAGGAGAGCAAGGACCGCGTCCGCAGCGCCATCC
TCACCAGCGGCTTCGAATTCCCGCTGCGCCGCATCACCCTCAACCTCGCTCCCGCCGACCTGCCCAAGGACGGAGGTCGC
TTCGACCTCGCCGTCGCGCTCGGCATCCTCGCCGCCAGCGGCCAGGTGCCGGCCTCCAGCCTGGAGATGCTCGAGTGCCT
GGGCGAGCTGGCCCTCTCCGGCGCCGTGCGCCCGGTCCAGGGCGTGCTGCCGGCCGCGCTCGCCGCCCGCACCGCCGGAC
GCACCCTGGTGGTGCCACGGGAGAACGCCGAGGAAGCCAGCCTCGCCAGTGGCCTTCGGGTGATCGCCATCGGCCACCTG
CTGGAGCTGGCCGCGCACCTGAACGGGCAGGCGCCCCTCGAACCCTTCGTTTCCGCCGGCCTGCCCGACCAGGCGGCCTC
CTACCCCGACCTGATCGAGGTGCAAGGCCAGGTGGCGGCCAAGCGCGCCCTGCTGGTGGCGGCGGCGGGGGCTCACAACC
TCCTGCTCTCCGGGCCGCCGGGCACCGGCAAGACGCTGCTCGCCAGCCGCCTCCCGGGCCTGCTACCCCCCTTGCAGGAG
CAGGAGGCGCTGGAAGTCGCCGCCATCCACTCGGTGGCCAGCCATGCCCCGCTGGATGCCTGGCCCCTGCGCCCGTTCCG
CCAACCGCACCACAGCGCCTCCGGCCCCGCCCTGGTGGGCGGAGGCAGCAAGCCAAGGCCCGGCGAGATCACCCTCGCGC
ATCAGGGCGTGCTGTTCCTCGACGAGTTGCCCGAGTTCGATCGCAAGGTGCTCGAAGTGCTCAGGGAGCCCCTGGAAAGC
GGCGAGATCGTCATCGCCCGCGCCAACGACCGTGTGCGCTTCCCCGCACGCTTCCAGCTGGTCGCCGCGATGAACCCCTG
TCCCTGCGGCTACCTGGGCGACAGCGCCAACCGCTGCCGCTGCACGCCCGAACAGATCCAGCGCTACCGCGCCAAGCTCT
CCGGCCCGCTGCTCGATCGTATCGACCTGCACCTGACCGTCGCCCGCGAAGCCACGTCGCTGGACGACCCGCTTCCCGGT
GGCCAGGACAGCGCCAGCGCCGCCGCCGAGGTGGCCCGCGCCCGCCAGCGCCAGCTCGATCGCCAGGGCTGCGCCAACGC
CTTCCTCGATCTCCAGGGCCTGCGTCGCCATTGCCCGCTGCCCGAGGAGGACCGCCGCTGGCTGGAGGGTGCCTGCGAGC
GCCTCGGCCTGTCGCTGCGGGCCGCACACCGCATCATCAAGGTCGCCCGCACGCTCGCCGACCTGGAAGACACCGAGGCC
GTCGCCCGCCACCACCTCGCCGAGGCACTGCAGTACCGTCCCTCCTCGGAGCCCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.768

99.398

0.564
  comM Vibrio campbellii strain DS40M4

55.758

99.398

0.554
  comM Haemophilus influenzae Rd KW20

53.6

100

0.538
  comM Glaesserella parasuis strain SC1401

52.2

100

0.524
  comM Legionella pneumophila str. Paris

49.703

100

0.504
  comM Legionella pneumophila strain ERS1305867

49.703

100

0.504
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.123

100

0.466

Multiple sequence alignment