Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   KI243_RS31745 Genome accession   NZ_AP021904
Coordinates   7127140..7128633 (+) Length   497 a.a.
NCBI ID   WP_103033056.1    Uniprot ID   -
Organism   Pseudomonas sp. Ost2     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 7122140..7133633
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KI243_RS31720 (PHLH7_62520) - 7122601..7123245 (+) 645 WP_212810278.1 hydrolase -
  KI243_RS31725 (PHLH7_62530) - 7123324..7125148 (+) 1825 Protein_6278 monovalent cation:proton antiporter-2 (CPA2) family protein -
  KI243_RS31730 (PHLH7_62550) - 7125283..7125510 (+) 228 WP_177108756.1 type II toxin-antitoxin system prevent-host-death family antitoxin -
  KI243_RS31735 (PHLH7_62560) - 7125507..7125881 (+) 375 WP_212810279.1 type II toxin-antitoxin system VapC family toxin -
  KI243_RS31740 (PHLH7_62570) - 7126047..7126709 (-) 663 WP_212810280.1 Abi family protein -
  KI243_RS31745 (PHLH7_62580) comM 7127140..7128633 (+) 1494 WP_103033056.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  KI243_RS31750 (PHLH7_62590) - 7128692..7130668 (-) 1977 WP_177128201.1 methyl-accepting chemotaxis protein -
  KI243_RS31755 (PHLH7_62600) - 7130859..7131779 (-) 921 WP_103033057.1 LysR substrate-binding domain-containing protein -
  KI243_RS31760 (PHLH7_62610) - 7131939..7133384 (+) 1446 WP_244861798.1 NorM family multidrug efflux MATE transporter -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53184.08 Da        Isoelectric Point: 7.3865

>NTDB_id=75731 KI243_RS31745 WP_103033056.1 7127140..7128633(+) (comM) [Pseudomonas sp. Ost2]
MSLAIVHTRAQVGVEAPAVTVETHMANGLPSLTLVGLPETAVKESKDRVRSAILNSALDFPARRITLNLAPADLPKDGGR
FDLAIALGILAASVQVPTLTLENLECLGELALSGAIRPVQGVLPAALAARAAGRTLVVPQANAEEASLASGLTVIAVDHL
LQLVAHLNGHAPISPFESDGLLHLGKPYPDLSEVQGQLAAKRALLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLDE
QEALEVAAIQSVASHVPLSSWPQRPFRQPHHSASGPALVGGGSRPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GQIIISRARDRVRFPARFQLVAAMNPCPCGYLGDPANRCRCTPEQVQRYRNKLSGPLLDRIDLHLTVAREATALRPAREP
GNNTAKAATQVAEARHCQQQRQGCANAFLDLEGLRQHCKLSTADEHWLETACERLTLSLRAAHRLLKVARTLADLEQLET
ISRDHLAEALQYRPSAS

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=75731 KI243_RS31745 WP_103033056.1 7127140..7128633(+) (comM) [Pseudomonas sp. Ost2]
ATGTCCCTGGCCATCGTCCACACTCGCGCCCAGGTGGGCGTGGAAGCCCCCGCCGTTACCGTTGAAACCCATATGGCCAA
CGGCTTGCCCTCCCTTACCCTGGTCGGCCTGCCCGAAACCGCCGTGAAGGAAAGCAAGGACCGGGTGCGCAGCGCGATCC
TCAATTCGGCCCTCGACTTTCCCGCTCGGCGCATCACCCTCAACCTCGCTCCGGCGGACCTGCCCAAGGACGGTGGGCGC
TTCGACCTGGCGATTGCCCTCGGCATCCTCGCCGCCAGCGTGCAGGTGCCGACCCTCACGCTGGAAAACCTGGAGTGCCT
GGGTGAACTCGCCTTGTCCGGCGCCATTCGCCCGGTGCAGGGCGTGTTGCCGGCGGCGCTCGCGGCACGCGCCGCCGGAC
GTACGCTGGTGGTGCCGCAGGCCAATGCCGAAGAGGCCTCGCTGGCTTCCGGGCTGACGGTGATCGCGGTCGATCATCTG
CTGCAACTGGTCGCCCATCTCAACGGCCATGCACCGATCAGCCCCTTCGAGTCCGATGGCCTGCTGCACCTGGGCAAGCC
CTATCCGGACCTGAGCGAAGTGCAAGGCCAGCTCGCCGCCAAACGCGCCCTGCTGATCGCCGCCGCCGGCGCCCACAACC
TGCTGTTCAGCGGGCCGCCGGGTACTGGCAAGACGCTGCTGGCAAGCCGTCTGCCCGGCCTGTTGCCGCCGCTGGATGAA
CAGGAAGCGCTGGAAGTGGCGGCGATCCAGTCGGTCGCCAGCCATGTGCCCCTCAGCAGTTGGCCGCAGCGACCGTTTCG
CCAGCCCCATCATTCGGCTTCCGGGCCGGCGCTGGTGGGCGGCGGGTCCAGGCCGCAGCCTGGCGAGATCACCCTCGCCC
ACCATGGCGTGCTGTTTCTCGACGAGTTGCCGGAGTTCGACCGCAAGGTGCTGGAGGTTTTACGCGAGCCGCTGGAGTCG
GGCCAGATCATCATTTCCCGGGCCCGGGATCGGGTACGCTTCCCGGCGCGCTTCCAACTGGTGGCGGCGATGAATCCCTG
CCCCTGTGGATATCTTGGCGACCCCGCCAACCGCTGTCGCTGCACGCCGGAGCAGGTCCAGCGCTATCGCAACAAACTCT
CCGGCCCCCTGCTCGATCGCATCGACCTGCACCTGACCGTAGCCCGCGAGGCCACGGCCTTGAGGCCCGCCCGGGAGCCG
GGAAACAACACGGCCAAGGCCGCGACACAGGTGGCAGAAGCCCGCCACTGCCAGCAACAGCGCCAGGGCTGCGCCAATGC
CTTTCTCGATCTGGAAGGCCTGCGACAGCACTGCAAGTTATCCACAGCCGACGAACACTGGCTGGAAACGGCTTGCGAGC
GATTGACCCTGTCGTTGCGGGCGGCCCATCGATTGCTGAAGGTCGCGCGGACCCTGGCGGATCTGGAGCAGCTGGAAACC
ATCAGCCGCGACCATCTGGCCGAGGCGCTGCAGTATCGGCCCAGTGCCAGTTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

56.162

99.598

0.559
  comM Vibrio cholerae strain A1552

55.354

99.598

0.551
  comM Glaesserella parasuis strain SC1401

54.6

100

0.549
  comM Haemophilus influenzae Rd KW20

53.707

100

0.539
  comM Legionella pneumophila str. Paris

49.395

99.799

0.493
  comM Legionella pneumophila strain ERS1305867

49.395

99.799

0.493
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.328

100

0.459

Multiple sequence alignment