Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   OQ483_RS22650 Genome accession   NZ_CP110985
Coordinates   4723888..4725408 (+) Length   506 a.a.
NCBI ID   WP_047362663.1    Uniprot ID   -
Organism   Enterobacter bugandensis strain E105227     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4718888..4730408
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OQ483_RS22625 (OQ483_22615) ilvE 4720455..4721384 (-) 930 WP_003860182.1 branched-chain-amino-acid transaminase -
  OQ483_RS22630 (OQ483_22620) ilvM 4721403..4721666 (-) 264 WP_003860184.1 acetolactate synthase 2 small subunit -
  OQ483_RS22635 (OQ483_22625) ilvG 4721663..4723309 (-) 1647 WP_045631347.1 acetolactate synthase 2 catalytic subunit -
  OQ483_RS22640 (OQ483_22630) ilvX 4723312..4723362 (-) 51 WP_166792073.1 peptide IlvX -
  OQ483_RS22645 (OQ483_22635) ilvL 4723449..4723547 (-) 99 WP_001311244.1 ilv operon leader peptide -
  OQ483_RS22650 (OQ483_22640) comM 4723888..4725408 (+) 1521 WP_047362663.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  OQ483_RS22655 (OQ483_22645) - 4725434..4725772 (-) 339 WP_008501577.1 DUF413 domain-containing protein -
  OQ483_RS22660 (OQ483_22650) hdfR 4725891..4726712 (+) 822 WP_028014823.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54951.96 Da        Isoelectric Point: 7.1834

>NTDB_id=757305 OQ483_RS22650 WP_047362663.1 4723888..4725408(+) (comM) [Enterobacter bugandensis strain E105227]
MSLSVVYTRAALGVKAPLISVEVHLSNGLPGLTLVGLPETTVKEARDRVRSAIINSGYTFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLNTTRLGSYEFVGELALTGALRGVPGAISGALEAIRAGRQIVVANENASEVSLIAEKGCLVAGHL
QEVCAWLEGRHELSEPEECEEAIADAPEDLSEIMGQEQGKRALEITAAGGHNLLLIGPPGTGKTMLASRLSGLLPPLSNH
EALESAAIYSLIGSTSLHKQWRRRPFRSPHHSASLTAMVGGGSIPGPGEISLAHNGILFLDELPEFERRVLDALREPIES
GEIHISRTRAKISYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLGKLSGPFLDRFDLSLEIPLPPPGLLRQTDRLG
ESSAHVRERVIAAQARQYARQNRLNARLDNAGIRQFCSLNVEDAAWLEETLTRFGLSIRAWQRLLKVARTIADVEGCTDI
ARIHLQEALSYRAIDRLLLHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=757305 OQ483_RS22650 WP_047362663.1 4723888..4725408(+) (comM) [Enterobacter bugandensis strain E105227]
ATGTCACTGTCAGTTGTTTATACGCGAGCGGCTCTCGGGGTAAAGGCTCCGCTTATTTCCGTTGAGGTTCATTTGAGTAA
TGGGCTGCCCGGACTCACGCTTGTCGGGTTACCTGAAACCACGGTTAAAGAGGCCAGGGACCGCGTTCGTAGCGCAATAA
TAAACAGCGGTTATACCTTCCCCGCAAAGAAGATCACCATCAACCTTGCTCCCGCCGACCTGCCCAAAGAGGGTGGGCGA
TACGATTTACCTATCGCAATTGCGCTTCTCGCGGCTTCTGAGCAGCTTAATACGACCAGGCTAGGCTCGTATGAGTTCGT
GGGTGAACTCGCGCTCACAGGCGCACTGAGAGGCGTTCCCGGTGCGATATCGGGAGCGCTGGAAGCCATACGTGCAGGGC
GGCAAATCGTTGTGGCCAATGAAAACGCATCAGAAGTGAGTCTTATTGCAGAAAAGGGATGTCTCGTCGCCGGGCATCTT
CAGGAAGTGTGCGCCTGGCTGGAAGGCCGCCATGAACTGTCCGAGCCGGAAGAGTGCGAAGAGGCTATAGCGGATGCGCC
AGAAGACCTCAGCGAGATCATGGGACAGGAGCAAGGGAAACGGGCGCTGGAGATTACGGCAGCGGGTGGGCACAATCTCC
TGCTGATTGGCCCGCCGGGTACGGGCAAAACCATGCTGGCGAGCAGGCTAAGCGGGCTGCTCCCGCCGCTTAGTAACCAT
GAAGCGCTGGAAAGCGCCGCCATCTATAGCCTGATCGGTTCGACGTCGTTGCACAAACAGTGGCGTCGACGTCCCTTTCG
TTCCCCGCATCATAGCGCGTCACTGACGGCAATGGTCGGTGGTGGGTCTATTCCGGGGCCGGGTGAGATCTCGCTGGCAC
ACAATGGCATTCTGTTTCTCGATGAGCTGCCTGAGTTTGAGCGCCGCGTGCTGGATGCGCTGAGGGAGCCCATTGAATCC
GGTGAGATACATATTTCACGCACGCGAGCCAAAATAAGCTATCCCGCCCGTTTTCAGCTCGTGGCGGCGATGAACCCCAG
TCCGACGGGGCATTATCAGGGCAACCATAACCGCTGTACGCCAGAGCAGACGCTGCGCTATCTGGGAAAGCTGTCTGGCC
CGTTTCTCGACCGTTTCGATTTATCACTGGAAATCCCCCTTCCGCCGCCGGGCCTACTCAGGCAGACGGATAGACTGGGT
GAAAGCTCCGCGCATGTTCGCGAGCGGGTTATCGCGGCACAGGCGAGACAGTATGCCCGTCAAAACAGGCTGAATGCACG
ACTGGATAATGCAGGGATCCGACAGTTTTGTTCTCTTAACGTTGAAGATGCGGCTTGGCTGGAGGAGACGTTGACGCGCT
TCGGGCTTTCCATACGTGCGTGGCAGCGCTTGTTAAAAGTAGCCAGAACCATTGCGGACGTGGAGGGCTGTACTGATATT
GCGAGGATACACTTGCAGGAAGCGCTGAGCTATCGGGCGATTGATCGTTTGCTTTTGCATCTGCAAAAGTTACTGGCATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

58.929

99.605

0.587
  comM Haemophilus influenzae Rd KW20

58.35

100

0.587
  comM Vibrio cholerae strain A1552

58.648

99.407

0.583
  comM Glaesserella parasuis strain SC1401

58.185

100

0.583
  comM Legionella pneumophila str. Paris

50.302

98.221

0.494
  comM Legionella pneumophila strain ERS1305867

50.302

98.221

0.494
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.181

100

0.443