Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OQ483_RS01615 Genome accession   NZ_CP110985
Coordinates   336952..337476 (+) Length   174 a.a.
NCBI ID   WP_121478507.1    Uniprot ID   -
Organism   Enterobacter bugandensis strain E105227     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 331952..342476
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OQ483_RS01595 (OQ483_01585) aphA 332277..332990 (+) 714 WP_041911537.1 acid phosphatase AphA -
  OQ483_RS01600 (OQ483_01590) - 333103..333519 (+) 417 WP_041911536.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  OQ483_RS01605 (OQ483_01595) - 333522..333875 (+) 354 WP_028015174.1 MmcQ/YjbR family DNA-binding protein -
  OQ483_RS01610 (OQ483_01600) uvrA 333879..336701 (-) 2823 WP_041911534.1 excinuclease ABC subunit UvrA -
  OQ483_RS01615 (OQ483_01605) ssb 336952..337476 (+) 525 WP_121478507.1 single-stranded DNA-binding protein SSB1 Machinery gene
  OQ483_RS01620 (OQ483_01610) - 337536..337817 (-) 282 WP_048957473.1 YjcB family protein -
  OQ483_RS01625 (OQ483_01615) - 338473..340038 (+) 1566 WP_060573097.1 EAL domain-containing protein -
  OQ483_RS01630 (OQ483_01620) soxS 340045..340371 (-) 327 WP_008503387.1 superoxide response transcriptional regulator SoxS -
  OQ483_RS01635 (OQ483_01625) soxR 340470..340928 (+) 459 WP_023331806.1 redox-sensitive transcriptional activator SoxR -
  OQ483_RS01640 (OQ483_01630) - 341216..341887 (+) 672 WP_028015178.1 glutathione S-transferase family protein -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18680.68 Da        Isoelectric Point: 5.2456

>NTDB_id=757285 OQ483_RS01615 WP_121478507.1 336952..337476(+) (ssb) [Enterobacter bugandensis strain E105227]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGSQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAPAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=757285 OQ483_RS01615 WP_121478507.1 336952..337476(+) (ssb) [Enterobacter bugandensis strain E105227]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAAATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCAGAAGTAGCCGGTGAGTATCTGCGTAAAGGTTCTCAGGTCTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGACCAATCCGGTCAGGAAAAATACACCACGGAAGTGGTGGTGAACGTGGG
CGGCACCATGCAGATGCTGGGTGGCCGTCAGGGCGGCGGCGCACCAGCCGGTGGCAGCCAGCAGCAGGGCGGTTGGGGTC
AGCCTCAGCAGCCACAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCTCGTCCGCAGCAGCAGTCTGCTCCGGCACCG
TCTAACGAACCGCCAATGGACTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.111

100

0.787
  ssb Glaesserella parasuis strain SC1401

57.377

100

0.603
  ssb Neisseria gonorrhoeae MS11

46.629

100

0.477
  ssb Neisseria meningitidis MC58

45.251

100

0.466
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.111

100

0.374