Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   OQ482_RS21805 Genome accession   NZ_CP110983
Coordinates   4540637..4542157 (+) Length   506 a.a.
NCBI ID   WP_248037410.1    Uniprot ID   -
Organism   Enterobacter bugandensis strain E104107     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4535637..4547157
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OQ482_RS21780 (OQ482_21775) ilvE 4537204..4538133 (-) 930 WP_003860182.1 branched-chain-amino-acid transaminase -
  OQ482_RS21785 (OQ482_21780) ilvM 4538152..4538415 (-) 264 WP_003860184.1 acetolactate synthase 2 small subunit -
  OQ482_RS21790 (OQ482_21785) ilvG 4538412..4540058 (-) 1647 WP_069733812.1 acetolactate synthase 2 catalytic subunit -
  OQ482_RS21795 (OQ482_21790) ilvX 4540061..4540111 (-) 51 WP_166792073.1 peptide IlvX -
  OQ482_RS21800 (OQ482_21795) ilvL 4540198..4540296 (-) 99 WP_001311244.1 ilv operon leader peptide -
  OQ482_RS21805 (OQ482_21800) comM 4540637..4542157 (+) 1521 WP_248037410.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  OQ482_RS21810 (OQ482_21805) - 4542185..4542523 (-) 339 WP_008501577.1 DUF413 domain-containing protein -
  OQ482_RS21815 (OQ482_21810) hdfR 4542642..4543463 (+) 822 WP_028014823.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54981.99 Da        Isoelectric Point: 7.3596

>NTDB_id=757280 OQ482_RS21805 WP_248037410.1 4540637..4542157(+) (comM) [Enterobacter bugandensis strain E104107]
MSLSVVYTRAALGVKAPLISVEVHLSNGLPGLTLVGLPETTVKEARDRVRSAIINSGYTFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLNTTRLGSYEFVGELALTGALRGVPGAISGALEAIRAGRQIVVANENASEVSLIAEKGCLIAGHL
QEVCAWLEGRHELSEPEECDEAIADAPEDLSEIMGQEQGKRSLEITAAGGHNLLLIGPPGTGKTMLASRLSGLLPPLNNH
EALESAAIYSLIGSTSLHKQWRRRPFRSPHHSASLTAMVGGGSIPGPGEISLAHNGILFLDELPEFERRVLDALREPIES
GEIHISRTRAKISYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLGKLSGPFLDRFDLSLEIPLPPPGLLRQTDKLG
ESSAHVRERVIAAQARQYARQNRLNARLDNAGIRQFCSLNVEDAAWLEETLTRFGLSIRAWQRLLKVARTIADVEGCTDI
ARKHLQEALSYRAIDRLLLHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=757280 OQ482_RS21805 WP_248037410.1 4540637..4542157(+) (comM) [Enterobacter bugandensis strain E104107]
ATGTCACTGTCAGTTGTTTATACGCGAGCGGCTCTCGGGGTAAAGGCTCCGCTTATTTCCGTAGAGGTTCATTTGAGTAA
TGGGCTGCCCGGACTCACGCTTGTCGGGTTACCTGAAACCACGGTTAAAGAGGCCAGGGACCGCGTTCGTAGCGCAATAA
TAAACAGCGGTTATACCTTCCCCGCAAAGAAGATCACCATCAACCTTGCTCCCGCTGACCTGCCCAAAGAGGGTGGGCGA
TACGATTTACCTATCGCAATTGCGCTTCTCGCGGCTTCTGAGCAGCTTAATACGACCAGGCTAGGCTCGTATGAGTTCGT
GGGTGAACTCGCGCTCACAGGCGCACTGAGAGGCGTTCCCGGTGCGATATCGGGAGCGCTGGAAGCCATACGTGCAGGGC
GGCAAATCGTTGTGGCCAATGAAAACGCATCAGAAGTGAGTCTTATTGCAGAAAAGGGATGTCTCATCGCCGGGCATCTT
CAGGAAGTGTGCGCCTGGCTGGAAGGCCGCCATGAACTGTCCGAGCCGGAAGAGTGCGACGAGGCTATAGCGGATGCGCC
AGAAGACCTCAGCGAGATCATGGGACAGGAGCAAGGGAAACGGTCGCTGGAGATTACGGCAGCGGGTGGGCACAATCTCC
TGCTGATTGGCCCGCCGGGTACGGGCAAAACCATGCTGGCAAGCAGGCTAAGCGGATTGCTCCCGCCGCTTAATAACCAT
GAAGCGCTGGAAAGCGCTGCCATCTATAGCCTGATCGGTTCGACGTCGTTGCACAAACAGTGGCGTCGACGTCCCTTTCG
TTCGCCGCATCATAGCGCGTCACTGACGGCAATGGTCGGCGGTGGGTCTATTCCGGGGCCTGGTGAGATCTCGCTGGCAC
ACAATGGCATTCTGTTTCTCGATGAGCTGCCTGAGTTTGAGCGCCGCGTGCTGGATGCGCTGAGGGAGCCCATTGAATCC
GGTGAGATACACATTTCACGCACGCGAGCCAAAATAAGCTATCCCGCCCGTTTTCAGCTCGTGGCGGCGATGAACCCCAG
TCCGACGGGGCATTATCAGGGCAACCATAACCGCTGTACGCCAGAGCAGACGCTGCGCTATCTGGGAAAGCTGTCTGGCC
CGTTTCTCGACCGTTTCGATTTATCACTGGAAATCCCCCTTCCGCCGCCGGGTCTGCTCAGGCAGACGGATAAACTGGGT
GAAAGCTCCGCGCATGTTCGCGAGCGGGTTATTGCGGCACAGGCGAGACAGTATGCCCGTCAAAACAGGCTGAATGCACG
ACTGGATAATGCAGGGATCCGACAGTTTTGTTCTCTTAACGTTGAAGATGCGGCTTGGCTGGAGGAGACGTTGACGCGCT
TTGGGCTTTCCATACGTGCGTGGCAGCGCTTGTTAAAAGTAGCCAGAACCATTGCGGACGTGGAGGGCTGTACTGATATT
GCGAGGAAACACTTGCAGGAAGCGCTGAGCTATCGGGCGATCGATCGTTTGCTTTTGCATCTGCAAAAGTTACTGGCATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

57.957

100

0.583
  comM Vibrio campbellii strain DS40M4

58.648

99.407

0.583
  comM Glaesserella parasuis strain SC1401

57.988

100

0.581
  comM Vibrio cholerae strain A1552

58.25

99.407

0.579
  comM Legionella pneumophila str. Paris

50.101

98.221

0.492
  comM Legionella pneumophila strain ERS1305867

50.101

98.221

0.492
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.984

100

0.441