Detailed information NTG0075720

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: KI243_RS27870
• Genome accession: NZ_AP021904
• Coordinates: 6313200..6314072 (+)
• Length: 290 a.a.
• NCBI ID: WP_178989964.1
• Uniprot ID: -
• Organism: Pseudomonas sp. Ost2
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 6308200..6319072

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KI243_RS27855 (PHLH7_54980)	pilA2	6309650..6310051 (-)	402	WP_177127819.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	Machinery gene
KI243_RS27860 (PHLH7_54990)	pilB	6310276..6311976 (+)	1701	WP_177127856.1	type IV-A pilus assembly ATPase PilB	Machinery gene
KI243_RS27865 (PHLH7_55000)	pilC	6311980..6313197 (+)	1218	WP_177127818.1	type II secretion system F family protein	Machinery gene
KI243_RS27870 (PHLH7_55010)	pilD	6313200..6314072 (+)	873	WP_178989964.1	A24 family peptidase	Machinery gene
KI243_RS27875 (PHLH7_55020)	coaE	6314069..6314692 (+)	624	WP_177084074.1	dephospho-CoA kinase	-
KI243_RS27880 (PHLH7_55030)	yacG	6314689..6314892 (+)	204	WP_017123507.1	DNA gyrase inhibitor YacG	-
KI243_RS27885 (PHLH7_55040)	-	6314898..6315113 (-)	216	WP_178989966.1	hypothetical protein	-
KI243_RS27890 (PHLH7_55050)	-	6315192..6315890 (-)	699	WP_017123505.1	energy-coupling factor ABC transporter permease	-
KI243_RS27895 (PHLH7_55060)	-	6316026..6316655 (+)	630	WP_042934238.1	DUF1780 domain-containing protein	-
KI243_RS27900 (PHLH7_55070)	-	6316723..6316896 (+)	174	WP_017123503.1	DUF3094 family protein	-
KI243_RS27905 (PHLH7_55080)	-	6316960..6318261 (+)	1302	WP_017123502.1	NAD(P)/FAD-dependent oxidoreductase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31955.11 Da
• Isoelectric Point: 8.6245

>NTDB_id=75720 KI243_RS27870 WP_178989964.1 6313200..6314072(+) (pilD) [Pseudomonas sp. Ost2]
MPLPDFLASHPLAFVLFTLILGLIVGSFLNVIVWRLPKMLERDWRAQAHEVLGLPQPEPAATYNLLLPHSHCPRCNHPIR
AWENLPLISYALLRGKCSNCKAPISKRYPLTELACGLLSAFVAWHFGFGWPAGLMLVLTWGLLAMSLIDADHQLLPDALV
LPLLWLGLIANHFAVFTSLGDALWGAVAGYMSLWSVYWLFKLLTGKEGMGHGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGLILLRLRNAQTSTPIPFGPYLAIAGWIALLWGGQITTSYLQFAGFK

Nucleotide

• Length: 873 bp

>NTDB_id=75720 KI243_RS27870 WP_178989964.1 6313200..6314072(+) (pilD) [Pseudomonas sp. Ost2]
ATGCCCTTACCCGACTTCCTGGCCAGCCACCCGCTGGCCTTTGTTTTATTCACGCTCATCCTCGGCCTGATCGTCGGCAG
CTTCCTCAACGTCATCGTCTGGCGCCTGCCAAAGATGCTCGAGCGCGATTGGCGCGCGCAGGCCCATGAGGTCCTCGGTC
TGCCGCAACCCGAGCCCGCTGCGACCTACAACCTGCTCCTGCCCCACTCCCATTGCCCGCGCTGCAACCACCCGATCCGC
GCCTGGGAAAACCTGCCACTGATCAGCTATGCCCTGCTGCGCGGCAAATGCTCCAACTGCAAGGCGCCCATCAGCAAGCG
CTACCCGTTGACCGAACTGGCCTGCGGCCTGCTCTCGGCCTTTGTCGCCTGGCATTTCGGTTTCGGCTGGCCCGCCGGCC
TGATGCTGGTGCTGACCTGGGGCCTGCTGGCGATGAGCCTGATCGACGCCGACCACCAACTGCTGCCTGACGCCCTGGTC
CTGCCGCTGCTGTGGCTGGGCCTGATCGCCAACCACTTCGCGGTCTTCACCTCCCTGGGCGACGCCCTCTGGGGCGCTGT
CGCCGGCTATATGAGCCTATGGTCGGTGTACTGGCTGTTCAAGCTGCTGACCGGCAAGGAAGGCATGGGCCACGGCGACT
TCAAGCTGCTGGCGATGCTCGGCGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCATCCCTGGTGGGT
GCGATCCTGGGGCTGATTCTGCTGCGCCTGCGCAATGCCCAGACCTCGACGCCAATCCCCTTTGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCATTGCTCTGGGGTGGTCAAATAACCACTTCTTATCTGCAATTTGCCGGTTTCAAATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (136-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.714	96.552	0.538
pilD	Vibrio campbellii strain DS40M4	54.064	97.586	0.528
pilD	Acinetobacter nosocomialis M2	52.632	91.724	0.483
pilD	Acinetobacter baumannii D1279779	52.632	91.724	0.483
pilD	Neisseria gonorrhoeae MS11	50.988	87.241	0.445