Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   KI231_RS28600 Genome accession   NZ_AP021903
Coordinates   6337528..6339021 (+) Length   497 a.a.
NCBI ID   WP_213026942.1    Uniprot ID   -
Organism   Pseudomonas sp. Seg1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 6317121..6355940 6337528..6339021 within 0


Gene organization within MGE regions


Location: 6317121..6355940
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KI231_RS28475 (PHLH6_56180) hemC 6317572..6318513 (-) 942 WP_213026933.1 hydroxymethylbilane synthase -
  KI231_RS28480 (PHLH6_56190) - 6318652..6319398 (-) 747 WP_103302550.1 LytTR family DNA-binding domain-containing protein -
  KI231_RS28485 (PHLH6_56200) argH 6319871..6321265 (+) 1395 WP_008084559.1 argininosuccinate lyase -
  KI231_RS28490 (PHLH6_56210) - 6321386..6322045 (-) 660 WP_213026934.1 glutathione S-transferase -
  KI231_RS28495 (PHLH6_56220) - 6322170..6322454 (+) 285 WP_103302551.1 hypothetical protein -
  KI231_RS28500 (PHLH6_56230) - 6322711..6322956 (+) 246 WP_039757399.1 TIGR02647 family protein -
  KI231_RS28505 (PHLH6_56240) - 6323140..6325983 (+) 2844 WP_213026935.1 class I adenylate cyclase -
  KI231_RS28510 (PHLH6_56250) rnk 6325990..6326400 (-) 411 WP_103302553.1 nucleoside diphosphate kinase regulator -
  KI231_RS28515 - 6326654..6326872 (-) 219 WP_103302555.1 DUF1289 domain-containing protein -
  KI231_RS28520 (PHLH6_56260) cyaY 6326877..6327209 (-) 333 WP_008084571.1 iron donor protein CyaY -
  KI231_RS28525 (PHLH6_56270) - 6327528..6327701 (+) 174 WP_042561715.1 lipoprotein -
  KI231_RS28530 (PHLH6_56280) lysA 6327711..6328958 (+) 1248 WP_213026936.1 diaminopimelate decarboxylase -
  KI231_RS28535 (PHLH6_56290) dapF 6328962..6329792 (+) 831 WP_103302557.1 diaminopimelate epimerase -
  KI231_RS28540 (PHLH6_56300) - 6329806..6330531 (+) 726 WP_103302558.1 DUF484 family protein -
  KI231_RS28545 (PHLH6_56310) xerC 6330534..6331433 (+) 900 WP_213026937.1 tyrosine recombinase XerC -
  KI231_RS28550 (PHLH6_56320) - 6331430..6332134 (+) 705 WP_213026938.1 HAD-IA family hydrolase -
  KI231_RS28555 (PHLH6_56330) sutA 6332332..6332658 (-) 327 WP_007920420.1 transcriptional regulator SutA -
  KI231_RS28560 (PHLH6_56340) - 6332761..6333186 (-) 426 WP_102901435.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  KI231_RS28565 (PHLH6_56350) - 6333403..6334740 (-) 1338 WP_103302560.1 ammonium transporter -
  KI231_RS28570 (PHLH6_56360) glnK 6334779..6335117 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  KI231_RS28575 (PHLH6_56370) - 6335513..6335773 (+) 261 WP_007920416.1 accessory factor UbiK family protein -
  KI231_RS28580 - 6335971..6336189 (+) 219 WP_213026939.1 hypothetical protein -
  KI231_RS28585 (PHLH6_56390) - 6336193..6336714 (+) 522 WP_213026940.1 Bro-N domain-containing protein -
  KI231_RS28590 (PHLH6_56400) - 6336709..6336978 (-) 270 WP_213026941.1 HigA family addiction module antitoxin -
  KI231_RS28595 (PHLH6_56410) - 6337183..6337380 (+) 198 WP_103302563.1 hypothetical protein -
  KI231_RS28600 (PHLH6_56420) comM 6337528..6339021 (+) 1494 WP_213026942.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  KI231_RS28605 (PHLH6_56430) - 6339378..6340550 (+) 1173 WP_213026943.1 hypothetical protein -
  KI231_RS28610 (PHLH6_56440) - 6340624..6341166 (+) 543 WP_213026944.1 adenylyl-sulfate kinase -
  KI231_RS28615 (PHLH6_56450) - 6341169..6341918 (+) 750 WP_064589796.1 class I SAM-dependent methyltransferase -
  KI231_RS28620 (PHLH6_56460) - 6341925..6344240 (+) 2316 WP_213026945.1 PEP-utilizing enzyme -
  KI231_RS28625 (PHLH6_56470) - 6344237..6344866 (+) 630 WP_213026946.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  KI231_RS28630 (PHLH6_56480) - 6344863..6345576 (+) 714 WP_213026947.1 phosphocholine cytidylyltransferase family protein -
  KI231_RS28635 (PHLH6_56490) - 6345590..6347566 (-) 1977 WP_213026948.1 methyl-accepting chemotaxis protein -
  KI231_RS28640 (PHLH6_56500) - 6347748..6348668 (-) 921 WP_213026949.1 LysR substrate-binding domain-containing protein -
  KI231_RS28645 (PHLH6_56510) - 6348828..6350225 (+) 1398 WP_213026950.1 NorM family multidrug efflux MATE transporter -
  KI231_RS28650 (PHLH6_56520) - 6350408..6352081 (-) 1674 WP_213026951.1 bifunctional diguanylate cyclase/phosphodiesterase -
  KI231_RS28655 (PHLH6_56530) rep 6352344..6354353 (+) 2010 WP_103302574.1 DNA helicase Rep -
  KI231_RS28660 (PHLH6_56540) - 6354411..6354983 (+) 573 WP_047596759.1 xanthine phosphoribosyltransferase -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53059.10 Da        Isoelectric Point: 7.8466

>NTDB_id=75699 KI231_RS28600 WP_213026942.1 6337528..6339021(+) (comM) [Pseudomonas sp. Seg1]
MSLSIVHSRAQIGVEAPAVTVEVHLANGLPSLTMVGLPEAAVKESKDRVRSAIINSGLQFPARRITLNLAPADLPKDGGR
FDLAIALGILSASVQVPCLTLDDVECLGELALSGAVRAVRGVLPAALAARKAGRALVVPRANAEEACLASGLKVYAVDHL
LEAVAHFNGHTPVEPYVSDGLIHAARPYPDLNEVQGQMAAKRALLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLSE
CEALEVAAIQSVASGVPLTHWPQRPFRQPHHSASGPALVGGSSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GHIVIARAKDRVRFPARFQLVAAMNPCPCGYLGEPSGKCSCTPDMVQRYRNKLSGPLLDRIDLHLTVAREATALNPAVQP
GEDSASAAALVAEARERQQKRQGCANAFLDLPGLRRHCKLSTTDETWLESACERLTLSLRSAHRLLKVARTLADLGQEEN
VRREHLAEALQYRPATQ

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=75699 KI231_RS28600 WP_213026942.1 6337528..6339021(+) (comM) [Pseudomonas sp. Seg1]
ATGTCCCTCTCCATCGTCCACAGTCGCGCCCAGATTGGCGTGGAAGCCCCCGCCGTCACCGTCGAAGTTCACCTGGCCAA
CGGTCTGCCGTCGCTGACCATGGTCGGCCTGCCCGAGGCGGCGGTGAAGGAGAGCAAGGATCGGGTGCGCAGCGCGATCA
TCAATTCCGGGCTGCAGTTTCCGGCGCGGCGGATCACTTTGAATCTGGCGCCGGCGGATCTGCCCAAGGATGGCGGACGG
TTTGATCTGGCGATTGCCTTGGGGATTCTGTCGGCGAGTGTGCAGGTGCCGTGTCTGACGCTGGATGATGTGGAATGTCT
GGGTGAGTTGGCGCTGTCCGGCGCCGTACGAGCGGTGCGTGGCGTGTTGCCCGCGGCATTAGCGGCGCGCAAGGCCGGAC
GGGCGCTGGTGGTGCCGCGGGCGAATGCCGAGGAAGCATGTCTGGCCTCGGGTTTGAAGGTGTACGCGGTGGATCATCTG
CTGGAAGCGGTGGCACATTTCAACGGGCACACGCCCGTCGAGCCTTATGTATCGGACGGCTTGATTCATGCCGCCAGACC
CTATCCCGATCTCAACGAAGTGCAGGGGCAAATGGCAGCCAAACGTGCGCTGCTGATCGCGGCGGCGGGCGCGCACAACC
TGTTGTTCAGCGGGCCGCCGGGAACGGGCAAGACATTGTTGGCCAGTCGATTGCCGGGACTGCTCCCGCCATTGTCCGAA
TGCGAAGCACTGGAAGTGGCCGCCATTCAATCCGTCGCCAGCGGCGTGCCGTTGACCCATTGGCCGCAACGTCCTTTTCG
CCAGCCACACCACTCGGCATCAGGCCCGGCACTGGTCGGCGGCAGTTCGAAACCGCAACCCGGCGAAATCACCCTGGCCC
ATCACGGCGTGCTGTTTCTCGATGAGCTGCCGGAGTTTGATCGCAAGGTGCTGGAGGTGCTGCGCGAACCGCTGGAGTCC
GGCCACATCGTGATTGCACGAGCCAAGGACCGCGTGCGCTTTCCAGCGCGCTTTCAATTGGTGGCAGCGATGAACCCGTG
TCCCTGTGGATATCTGGGTGAACCAAGTGGCAAGTGTTCGTGCACGCCGGACATGGTTCAGCGTTATCGCAACAAGCTGT
CGGGCCCCCTCTTGGACCGGATCGACTTACACCTGACGGTGGCGCGGGAGGCAACGGCGCTGAACCCTGCGGTCCAGCCA
GGGGAAGACAGCGCCAGTGCCGCCGCGCTGGTAGCCGAGGCCCGCGAGCGACAACAGAAACGTCAGGGATGTGCCAATGC
GTTTCTTGATCTGCCGGGGCTGCGTCGCCACTGCAAGTTATCCACAACCGACGAGACCTGGCTGGAATCAGCCTGTGAAC
GACTGACCTTGTCGCTGCGCTCGGCGCACCGACTTCTCAAGGTCGCCAGGACGTTGGCCGATCTGGGGCAGGAAGAAAAC
GTCCGGCGCGAGCACTTGGCAGAGGCGTTGCAATATCGGCCGGCAACACAGTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.545

99.598

0.543
  comM Glaesserella parasuis strain SC1401

53.4

100

0.537
  comM Vibrio campbellii strain DS40M4

53.939

99.598

0.537
  comM Haemophilus influenzae Rd KW20

53.2

100

0.535
  comM Legionella pneumophila str. Paris

50.402

100

0.505
  comM Legionella pneumophila strain ERS1305867

50.402

100

0.505
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.491

100

0.457

Multiple sequence alignment