Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   OOT43_RS19980 Genome accession   NZ_CP110921
Coordinates   4249596..4251116 (-) Length   506 a.a.
NCBI ID   WP_266022467.1    Uniprot ID   -
Organism   Methylococcus mesophilus strain 16-5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 4247596..4259143 4249596..4251116 within 0


Gene organization within MGE regions


Location: 4247596..4259143
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OOT43_RS19975 (OOT43_19975) rep 4247596..4249599 (-) 2004 WP_266022466.1 DNA helicase Rep -
  OOT43_RS19980 (OOT43_19980) comM 4249596..4251116 (-) 1521 WP_266022467.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  OOT43_RS19985 (OOT43_19985) - 4251125..4251376 (-) 252 WP_266022468.1 accessory factor UbiK family protein -
  OOT43_RS19990 (OOT43_19990) glnK 4251637..4251975 (+) 339 WP_010961376.1 P-II family nitrogen regulator -
  OOT43_RS19995 (OOT43_19995) - 4252007..4253449 (+) 1443 WP_317134025.1 ammonium transporter -
  OOT43_RS20000 (OOT43_20000) - 4253440..4253793 (-) 354 WP_266022471.1 DUF1810 family protein -
  OOT43_RS20005 (OOT43_20005) - 4254102..4255163 (+) 1062 WP_266022472.1 BLUF domain-containing protein -
  OOT43_RS20010 (OOT43_20010) - 4255976..4256653 (+) 678 WP_266022473.1 response regulator transcription factor -
  OOT43_RS20015 (OOT43_20015) - 4256658..4257758 (+) 1101 WP_266022474.1 ATP-binding protein -
  OOT43_RS20020 (OOT43_20020) - 4258038..4259143 (+) 1106 WP_394358012.1 IS3 family transposase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54080.12 Da        Isoelectric Point: 7.7355

>NTDB_id=756948 OOT43_RS19980 WP_266022467.1 4249596..4251116(-) (comM) [Methylococcus mesophilus strain 16-5]
MALAIVHSRARQGIEAPEVTVEVHIAPGLPNLTIVGLPETAVRESKDRVRGALITTGFEFPAQRITVNLAPADLPKEGGR
FDLPIALGILAASKQLRADRLADMECVGELALTGELRPVPGALPVALQSRRAERNLIVPWDNAGEAALVSGACVLPARHL
LDVCAHLDGSRPLAAAESRTVAVPASEEFPDLAEVRGQFQAKRALEIAAAGRHNLLMLGPPGTGKSMLASRMPGILPDLT
ETEALETAAVASVSGMSFDPAAWRRPPYRAPHHTASAPALVGGGSAPKPGEISLAHNGVLFLDELPEFDRRVLEVLREPL
ESGGITISRAAQRLDFPARFQLIAAMNPCPCGYLGDASGRCHCSTEQVSRYRMRISGPLLDRIDMHIDVPRQDPAALLDA
APTSEESSAAVRTRVIAAREKALHRSGQPNALLTPRQIERHCIADGAGRTLLEQAMARLNLSHRAYHRILKLARTIADLA
GSEAITSAHIGEAISYRRLDRAPAAR

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=756948 OOT43_RS19980 WP_266022467.1 4249596..4251116(-) (comM) [Methylococcus mesophilus strain 16-5]
ATGGCGCTCGCCATCGTCCACAGCCGGGCCCGCCAGGGCATCGAGGCGCCGGAAGTCACCGTGGAAGTCCACATCGCCCC
GGGCCTACCCAACCTCACCATCGTGGGGCTGCCGGAAACCGCCGTGCGCGAGAGCAAGGACCGGGTGCGCGGCGCGCTGA
TCACCACCGGCTTCGAATTTCCCGCCCAGCGCATCACGGTCAATCTGGCTCCGGCCGATCTGCCCAAGGAAGGCGGCCGT
TTCGACCTACCCATCGCCCTCGGCATCCTGGCCGCGTCCAAGCAGCTCCGCGCCGATCGGCTGGCGGATATGGAATGTGT
CGGCGAACTGGCCCTGACCGGCGAGCTGCGCCCGGTGCCCGGCGCCCTGCCGGTCGCCCTCCAATCGCGCCGCGCCGAGC
GGAACCTGATCGTCCCCTGGGACAACGCCGGCGAAGCGGCCCTGGTCTCCGGCGCCTGCGTGCTCCCGGCCCGCCATCTG
CTCGACGTGTGCGCCCATCTGGACGGCAGCCGCCCTCTCGCCGCCGCCGAATCGCGCACCGTAGCGGTTCCGGCCAGCGA
GGAATTTCCCGATCTCGCCGAAGTCCGCGGCCAGTTCCAGGCCAAGCGCGCCCTGGAAATCGCGGCCGCCGGCCGCCACA
ACCTGCTGATGCTGGGCCCGCCCGGCACCGGCAAATCCATGCTGGCCTCGCGCATGCCCGGCATCCTGCCCGACCTGACC
GAGACGGAAGCGCTGGAAACCGCGGCGGTCGCCTCGGTCAGCGGCATGTCCTTCGACCCGGCGGCCTGGCGCCGCCCGCC
GTACCGTGCGCCCCATCACACCGCCTCCGCCCCGGCGCTGGTCGGCGGAGGAAGCGCGCCCAAGCCCGGTGAGATTTCGC
TGGCCCACAACGGCGTGCTGTTCCTGGACGAGCTGCCGGAATTCGACCGGCGCGTCCTGGAAGTCCTGCGCGAGCCCTTG
GAAAGCGGCGGCATCACCATCTCCCGCGCCGCCCAACGGCTGGACTTCCCGGCCCGGTTCCAGCTCATCGCCGCGATGAA
TCCCTGCCCCTGCGGTTATCTGGGCGATGCCTCCGGACGATGCCATTGTTCGACGGAACAAGTCTCGCGCTACCGGATGC
GCATCTCCGGCCCCCTGCTGGATCGGATCGACATGCACATCGACGTGCCGCGGCAGGATCCTGCCGCTCTGCTGGACGCC
GCCCCCACAAGCGAAGAATCCAGCGCCGCGGTCCGGACCCGCGTGATCGCCGCCCGCGAAAAGGCGCTTCACCGCAGCGG
CCAGCCCAACGCCCTGCTCACGCCGCGCCAGATCGAGCGCCACTGCATTGCCGACGGCGCGGGACGCACCTTGCTGGAAC
AGGCCATGGCGCGGCTGAACCTGTCGCACCGCGCCTATCACCGTATCCTCAAGCTCGCCCGCACCATCGCCGATCTCGCC
GGCAGCGAGGCGATCACCTCCGCCCACATCGGCGAAGCCATCAGCTACCGGCGTCTCGACCGGGCTCCCGCCGCCCGATG
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-497)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-394)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.487

99.012

0.559
  comM Vibrio campbellii strain DS40M4

55.248

99.802

0.551
  comM Haemophilus influenzae Rd KW20

54.762

99.605

0.545
  comM Glaesserella parasuis strain SC1401

53.678

99.407

0.534
  comM Legionella pneumophila str. Paris

49.398

98.419

0.486
  comM Legionella pneumophila strain ERS1305867

49.398

98.419

0.486
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.589

100

0.472