Detailed information NTG0075663

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: KI241_RS23130
• Genome accession: NZ_AP021902
• Coordinates: 5276005..5277351 (+)
• Length: 448 a.a.
• NCBI ID: WP_212803044.1
• Uniprot ID: -
• Organism: Pseudomonas sp. Cab53
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 5271005..5282351

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KI241_RS23105 (PHLH5_46270)	pgeF	5271217..5271942 (-)	726	WP_123579599.1	peptidoglycan editing factor PgeF	-
KI241_RS23110 (PHLH5_46280)	rluD	5271939..5272901 (-)	963	WP_042730708.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
KI241_RS23115 (PHLH5_46290)	-	5273053..5274069 (+)	1017	WP_042730707.1	outer membrane protein assembly factor BamD	-
KI241_RS23120 (PHLH5_46300)	-	5274196..5274429 (+)	234	WP_042730706.1	PP0621 family protein	-
KI241_RS23125 (PHLH5_46310)	pilS	5274419..5276008 (+)	1590	WP_047736281.1	ATP-binding protein	Regulator
KI241_RS23130 (PHLH5_46320)	pilR	5276005..5277351 (+)	1347	WP_212803044.1	sigma-54 dependent transcriptional regulator	Regulator
KI241_RS23135 (PHLH5_46330)	thiO	5278000..5279099 (-)	1100	Protein_4581	glycine oxidase ThiO	-
KI241_RS23140 (PHLH5_46340)	-	5279157..5279558 (-)	402	WP_042730702.1	type IV pilin protein	-

Sequence

Protein

• Length: 448 a.a.
• Molecular weight: 50187.57 Da
• Isoelectric Point: 5.7470

>NTDB_id=75663 KI241_RS23130 WP_212803044.1 5276005..5277351(+) (pilR) [Pseudomonas sp. Cab53]
MNTRSRQRILIVDDEPDIRELLDITLGRMKLDTRSAKNLAEAQALLADEAFDLCLTDMRLPDGTGLELVQHIQQRYIQLP
VAMITAYGSLETAIDALKAGAFDFLTKPVDLTRLRELVASALRLPPVAAPGTTIERCLLGESPPMRNVRKQIEKLARSQA
PVYISGESGCGKELVARLIHEQGPRSNLGFVPVNCGAIPTELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVA
DLPLAMQVKLLRAIQEKAVRAVGGQQEEVVDVRILCATHKDLDAEVAAGRFRQDLYYRLNVIELRVPPLRERREDIEPLA
NHMLQRLSANTASPAVKLHPQALEALRNYRFPGNVRELENMLERAYTLCEHQQIEADDLRLADSNNATDATSADLVQVDN
LEDYLEDVERKLILQALEETRWNRTAAAQRLKLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1347 bp

>NTDB_id=75663 KI241_RS23130 WP_212803044.1 5276005..5277351(+) (pilR) [Pseudomonas sp. Cab53]
TTGAATACACGCTCACGGCAACGAATCCTGATCGTCGACGACGAACCGGACATCCGCGAACTCCTGGACATCACCCTGGG
CCGGATGAAACTCGACACCCGCAGCGCCAAGAACCTTGCCGAGGCCCAAGCCCTGTTGGCGGACGAGGCCTTCGACCTGT
GCCTGACCGACATGCGCCTGCCCGATGGCACCGGCCTGGAACTGGTGCAACACATCCAGCAACGCTACATCCAACTGCCC
GTGGCGATGATCACCGCCTACGGCAGCCTGGAAACCGCCATCGACGCCCTCAAGGCCGGGGCCTTCGACTTCCTGACCAA
GCCGGTCGACCTGACCCGGTTGCGTGAACTGGTCGCCAGCGCCCTGCGCCTGCCACCGGTTGCCGCCCCCGGCACAACCA
TCGAGCGCTGCCTGCTGGGCGAATCACCGCCCATGCGCAACGTGCGCAAACAGATCGAAAAACTCGCCCGCAGCCAGGCG
CCGGTGTACATCAGCGGCGAGTCGGGCTGTGGCAAGGAGTTGGTGGCCCGGCTGATCCACGAACAAGGTCCCCGTTCCAA
TCTCGGCTTTGTGCCGGTCAACTGTGGAGCAATTCCCACGGAGCTGATGGAAAGCGAGTTTTTCGGCCACCGCAAAGGCA
GTTTCAGCGGCGCCATCGAAGACAAACCCGGGCTGTTCCAGGCCGCCCATGGCGGCACGCTGTTCCTCGACGAGGTGGCT
GACCTGCCGCTGGCCATGCAAGTCAAACTGCTGCGGGCCATCCAGGAAAAAGCCGTGCGCGCCGTCGGCGGCCAACAGGA
AGAAGTGGTGGACGTACGCATCCTTTGCGCCACCCACAAGGACCTGGACGCCGAAGTCGCCGCCGGGCGTTTTCGCCAGG
ACCTGTACTATCGGCTGAACGTCATCGAACTGCGCGTCCCGCCCCTGCGCGAACGCCGCGAAGACATCGAGCCCCTGGCC
AACCACATGCTCCAACGCCTGTCGGCCAACACCGCCAGCCCTGCCGTCAAACTCCACCCCCAGGCCCTGGAGGCCCTTCG
CAACTACCGTTTCCCAGGAAACGTGCGGGAGCTGGAGAACATGCTCGAACGGGCCTACACCCTTTGCGAGCACCAACAGA
TCGAAGCCGACGACCTGCGCCTGGCCGACAGCAATAACGCCACCGACGCCACCAGCGCTGACCTGGTGCAGGTCGACAAC
CTGGAAGACTACCTGGAAGACGTCGAACGCAAACTCATCCTCCAGGCCCTGGAAGAAACCCGCTGGAACCGCACGGCGGC
GGCCCAGCGGTTGAAACTGTCGTTTCGTTCGATGCGGTATCGGTTGAAGAAGCTGGGGCTGGATTGA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (9-118)

• Bacterial regulatory protein, Fis family (HTH_8) (405-445)

• Sigma-54 interaction domain (Sigma54_activat) (138-304)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	79.279	99.107	0.786
pilR	Acinetobacter baumannii strain A118	49.455	100	0.507