Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KI241_RS24270 Genome accession   NZ_AP021902
Coordinates   5525202..5525714 (-) Length   170 a.a.
NCBI ID   WP_042729629.1    Uniprot ID   A0A0D0PLJ0
Organism   Pseudomonas sp. Cab53     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5520202..5530714
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KI241_RS24250 (PHLH5_48590) - 5521285..5522043 (-) 759 WP_042732722.1 alpha/beta fold hydrolase -
  KI241_RS24255 (PHLH5_48600) - 5522033..5523142 (-) 1110 WP_047736377.1 DUF3182 family protein -
  KI241_RS24260 (PHLH5_48610) - 5523481..5524476 (-) 996 WP_212803081.1 GlxA family transcriptional regulator -
  KI241_RS24265 (PHLH5_48620) - 5524575..5525132 (+) 558 WP_212803082.1 cysteine hydrolase family protein -
  KI241_RS24270 (PHLH5_48630) ssb 5525202..5525714 (-) 513 WP_042729629.1 single-stranded DNA-binding protein Machinery gene
  KI241_RS24275 (PHLH5_48640) - 5525724..5527121 (-) 1398 WP_042729628.1 MFS transporter -
  KI241_RS24280 (PHLH5_48650) uvrA 5527301..5530135 (+) 2835 WP_042729627.1 excinuclease ABC subunit UvrA -
  KI241_RS24285 (PHLH5_48660) bfr 5530244..5530708 (-) 465 WP_003176400.1 bacterioferritin -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18969.14 Da        Isoelectric Point: 5.9455

>NTDB_id=75665 KI241_RS24270 WP_042729629.1 5525202..5525714(-) (ssb) [Pseudomonas sp. Cab53]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDQQGGNNYQQSAPRQQAPRPQAAPQPQRERPAPQQAAPQPAPD
FDSFDDDIPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=75665 KI241_RS24270 WP_042729629.1 5525202..5525714(-) (ssb) [Pseudomonas sp. Cab53]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACTTGCGGCCAGGATCCCGAAGTTCGCTACCTGCCGAACGGCAA
CGCCGTGACCAACCTGAGTCTGGCGACCAGCGAACAGTGGACCGACAAGCAGACCGGCCAGAAGGTCGAGAAGACCGAAT
GGCACCGCGTGTCGATGTTCGGCAAAGTGGCGGAGATCGCCGGCGAATACCTGCGCAAGGGTTCGCAGGTGTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACCGAAATCGTGGTGGACATGCAAGGCAC
CATGCAACTGCTGGGCGGCCGTCCACAGGGTGACCAGCAAGGTGGCAACAACTACCAGCAGTCGGCCCCCCGTCAGCAGG
CACCTCGCCCACAGGCGGCGCCACAGCCACAACGCGAGCGTCCAGCCCCGCAACAGGCCGCGCCGCAACCGGCCCCGGAT
TTCGACAGCTTCGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D0PLJ0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.354

100

0.6
  ssb Glaesserella parasuis strain SC1401

48.066

100

0.512
  ssb Neisseria gonorrhoeae MS11

48.023

100

0.5
  ssb Neisseria meningitidis MC58

47.458

100

0.494

Multiple sequence alignment