Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   KI241_RS01985 Genome accession   NZ_AP021902
Coordinates   462201..463265 (+) Length   354 a.a.
NCBI ID   WP_047736134.1    Uniprot ID   -
Organism   Pseudomonas sp. Cab53     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 457201..468265
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KI241_RS01975 (PHLH5_03930) - 458139..459407 (+) 1269 WP_042731496.1 malic enzyme-like NAD(P)-binding protein -
  KI241_RS01980 (PHLH5_03940) - 459549..461993 (-) 2445 WP_199925097.1 penicillin-binding protein 1A -
  KI241_RS01985 (PHLH5_03950) comM 462201..463265 (+) 1065 WP_047736134.1 pilus assembly protein PilM Machinery gene
  KI241_RS01990 (PHLH5_03960) - 463265..463831 (+) 567 WP_042731989.1 PilN domain-containing protein -
  KI241_RS01995 (PHLH5_03970) pilO 463828..464451 (+) 624 WP_042731988.1 type 4a pilus biogenesis protein PilO -
  KI241_RS02000 (PHLH5_03980) - 464448..464993 (+) 546 WP_047736133.1 pilus assembly protein PilP -
  KI241_RS02005 (PHLH5_03990) pilQ 464990..467086 (+) 2097 WP_042731986.1 type IV pilus secretin PilQ Machinery gene
  KI241_RS02010 (PHLH5_04000) aroK 467091..467609 (+) 519 WP_042731985.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38199.71 Da        Isoelectric Point: 4.8313

>NTDB_id=75645 KI241_RS01985 WP_047736134.1 462201..463265(+) (comM) [Pseudomonas sp. Cab53]
MLRLFNKKTHALLGIDISSTSVKLLELSRQGERYRVESYAVEPLPANAVVEKNIAELEGVGLALSRVLVKARTPVRSVAV
AVAGSAVITKTIEMDAGLSDDDMENQLKIEADQYIPYPLDEVAIDFEVQGVSPRSDERVEVLLAACRKENVEVREAALAL
AGLTARVVDVEAYALERSFGLLATQLAASQERLTVAVVDIGATMTTLSVLHNGRIIYTREQLFGGRQLTEEIQRRYGLTP
EQAGLAKKQGGLPDDYVGEVLQPFREALVQQVSRSLQFFFASGQYSAVDHILLAGGTASVTGLDRLIEQRLGTPTQVANP
FTNMALSSKVNAGALASDAPALMIACGLALRSFD

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=75645 KI241_RS01985 WP_047736134.1 462201..463265(+) (comM) [Pseudomonas sp. Cab53]
GTGCTACGACTCTTCAATAAAAAAACCCATGCACTTCTGGGGATCGACATCAGTTCAACGTCGGTGAAGCTGCTGGAGTT
GAGCCGCCAGGGCGAGCGCTACCGCGTCGAGTCCTACGCGGTGGAACCGCTGCCGGCCAATGCCGTGGTCGAGAAGAACA
TCGCCGAGCTCGAAGGCGTGGGCCTGGCGTTGTCGCGGGTTCTGGTCAAGGCCCGGACGCCCGTGCGCAGCGTGGCGGTG
GCCGTGGCGGGGTCGGCGGTGATCACCAAGACCATCGAGATGGACGCCGGCCTGTCCGACGACGACATGGAAAACCAGCT
CAAGATCGAGGCCGACCAATACATTCCCTATCCGTTGGATGAAGTGGCCATCGACTTCGAGGTCCAGGGCGTGTCGCCGC
GCAGTGACGAGCGGGTCGAAGTGCTGCTGGCGGCCTGTCGCAAGGAAAACGTCGAGGTCCGCGAGGCCGCGCTGGCGCTG
GCCGGGCTGACGGCCCGGGTGGTGGACGTGGAGGCCTATGCGCTGGAACGTTCGTTCGGCCTGCTCGCCACGCAACTGGC
CGCGTCCCAGGAGCGCCTGACCGTGGCGGTGGTCGACATCGGCGCGACCATGACCACCCTCAGCGTCCTGCACAACGGGC
GCATCATCTATACCCGCGAACAATTGTTCGGTGGCCGCCAACTCACCGAGGAAATCCAGCGCCGCTATGGCCTGACGCCC
GAGCAAGCCGGCCTGGCGAAGAAGCAGGGCGGCCTGCCCGACGATTATGTCGGCGAGGTGCTGCAACCCTTTCGCGAGGC
GCTGGTGCAGCAGGTGTCGCGTTCCTTGCAGTTTTTCTTCGCCTCGGGCCAGTACAGCGCGGTGGACCATATCCTGCTGG
CCGGCGGCACGGCCTCGGTCACCGGTCTGGACCGACTGATCGAACAGCGCCTGGGCACGCCGACCCAGGTGGCCAACCCG
TTCACCAACATGGCCCTGAGCAGCAAGGTCAATGCCGGTGCGCTGGCCAGTGACGCGCCGGCACTCATGATCGCGTGCGG
GCTGGCCCTCAGGAGTTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

55.65

100

0.557
  pilM Acinetobacter baumannii D1279779

55.65

100

0.557
  comM Acinetobacter baylyi ADP1

54.237

100

0.542
  pilM Legionella pneumophila strain ERS1305867

47.458

100

0.475

Multiple sequence alignment